Detailed information of component protein
Summary
| Component ID | T6CP009050 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00612  (Type i4a) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (253 a.a.); Nucleotide sequence (759 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS13780 |
| Coordinate (Strand) | 2980735..2981493 (+) |
| NCBI ID | WP_003104706.1 |
| RefSeq | NC_017548 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 2.9e-29 | 72..227 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 253 a.a.
>T6CP009050 NC_017548:2980735-2981493 [Pseudomonas aeruginosa M18] [TssL]
MPEGSAGPFSQAYQEQPLSTAFRQAWQEWLEAWGALDRDAQDVPRMVERALELSTRITRRLWRSAFASVGDAAGVQVKAM
VYAFVALVDETLVFSAWPGQGAWQDKPLESHLYGSRQAGEYLPLAIKRLLDERAPASRDLANVYLQCLILGFRGRLRGPR
GEALHEKWRQALFAFAWQREADAADLGRRLEQPAAAPPRRLPVRAALPDGFRLGLAVLGLVLLMSGIGHLFWRDIQHEMA
AVTHLADAEQAP*
MPEGSAGPFSQAYQEQPLSTAFRQAWQEWLEAWGALDRDAQDVPRMVERALELSTRITRRLWRSAFASVGDAAGVQVKAM
VYAFVALVDETLVFSAWPGQGAWQDKPLESHLYGSRQAGEYLPLAIKRLLDERAPASRDLANVYLQCLILGFRGRLRGPR
GEALHEKWRQALFAFAWQREADAADLGRRLEQPAAAPPRRLPVRAALPDGFRLGLAVLGLVLLMSGIGHLFWRDIQHEMA
AVTHLADAEQAP*
Nucleotide sequence: 759 bp
>T6CP009050 NC_017548:2980735-2981493 [Pseudomonas aeruginosa M18] [TssL]
ATGCCCGAAGGGAGTGCAGGGCCTTTTTCCCAGGCGTACCAGGAGCAACCGCTCAGCACGGCATTCCGCCAGGCCTGGCA
GGAATGGCTGGAGGCCTGGGGCGCCCTCGACCGGGACGCCCAGGATGTGCCACGGATGGTCGAGCGCGCCCTCGAACTGT
CCACCCGCATCACCCGGCGTCTGTGGCGCAGCGCCTTCGCCAGCGTCGGCGACGCGGCGGGCGTGCAGGTCAAGGCGATG
GTCTATGCCTTCGTCGCCCTGGTCGACGAGACCCTGGTCTTCAGCGCCTGGCCGGGGCAGGGCGCCTGGCAGGACAAACC
GCTGGAGTCGCATCTCTACGGCAGTCGCCAGGCGGGCGAATACCTGCCGCTGGCGATCAAGCGCCTGCTCGACGAACGCG
CCCCGGCCAGTCGCGACCTGGCCAACGTCTACCTGCAATGCCTGATCCTCGGCTTCCGCGGTCGCCTGCGCGGGCCGCGC
GGCGAGGCGCTGCACGAGAAGTGGCGGCAGGCGTTGTTCGCCTTCGCCTGGCAGCGCGAGGCGGACGCCGCCGACCTCGG
CCGTCGCCTTGAGCAGCCCGCCGCTGCGCCGCCACGGCGTCTGCCGGTGCGCGCAGCGCTGCCGGACGGCTTCCGCCTGG
GCCTGGCGGTGCTCGGGCTGGTGCTGTTGATGAGCGGTATCGGACACCTGTTCTGGCGCGACATCCAGCACGAAATGGCG
GCGGTGACCCACCTGGCCGATGCGGAGCAGGCGCCATGA
ATGCCCGAAGGGAGTGCAGGGCCTTTTTCCCAGGCGTACCAGGAGCAACCGCTCAGCACGGCATTCCGCCAGGCCTGGCA
GGAATGGCTGGAGGCCTGGGGCGCCCTCGACCGGGACGCCCAGGATGTGCCACGGATGGTCGAGCGCGCCCTCGAACTGT
CCACCCGCATCACCCGGCGTCTGTGGCGCAGCGCCTTCGCCAGCGTCGGCGACGCGGCGGGCGTGCAGGTCAAGGCGATG
GTCTATGCCTTCGTCGCCCTGGTCGACGAGACCCTGGTCTTCAGCGCCTGGCCGGGGCAGGGCGCCTGGCAGGACAAACC
GCTGGAGTCGCATCTCTACGGCAGTCGCCAGGCGGGCGAATACCTGCCGCTGGCGATCAAGCGCCTGCTCGACGAACGCG
CCCCGGCCAGTCGCGACCTGGCCAACGTCTACCTGCAATGCCTGATCCTCGGCTTCCGCGGTCGCCTGCGCGGGCCGCGC
GGCGAGGCGCTGCACGAGAAGTGGCGGCAGGCGTTGTTCGCCTTCGCCTGGCAGCGCGAGGCGGACGCCGCCGACCTCGG
CCGTCGCCTTGAGCAGCCCGCCGCTGCGCCGCCACGGCGTCTGCCGGTGCGCGCAGCGCTGCCGGACGGCTTCCGCCTGG
GCCTGGCGGTGCTCGGGCTGGTGCTGTTGATGAGCGGTATCGGACACCTGTTCTGGCGCGACATCCAGCACGAAATGGCG
GCGGTGACCCACCTGGCCGATGCGGAGCAGGCGCCATGA