Detailed information of component protein
Summary
Component ID | T6CP009049 |
Component protein type | TssE |
T6SS ID (Type) | T6SS00612 (Type i4a) |
Strain | Pseudomonas aeruginosa M18 |
Replicon | chromosome |
Sequence | Protein sequence (142 a.a.); Nucleotide sequence (426 bp) |
Reference |
External database links
Locus tag (Gene) | PAM18_RS13750 |
Coordinate (Strand) | 2975580..2976005 (-) |
NCBI ID | WP_014602901.1 |
RefSeq | NC_017548 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 4.3e-17 | 26..115 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
- | - |
Protein sequence: 142 a.a.
>T6CP009049 NC_017548:c2976005-2975580 [Pseudomonas aeruginosa M18] [TssE]
MSGALPPLFERLSAEADERPAFDDRALAESVRGELLRLLNTRRPANARSGILAYGLADWTAVQRLRAEDRRQLAREVRAA
VEHFEPRLQLAEVEVEPDPGNPQRLRIQLGGSLRSGSRLTPALFVIEQGSDGLEVCHERFD*
MSGALPPLFERLSAEADERPAFDDRALAESVRGELLRLLNTRRPANARSGILAYGLADWTAVQRLRAEDRRQLAREVRAA
VEHFEPRLQLAEVEVEPDPGNPQRLRIQLGGSLRSGSRLTPALFVIEQGSDGLEVCHERFD*
Nucleotide sequence: 426 bp
>T6CP009049 NC_017548:c2976005-2975580 [Pseudomonas aeruginosa M18] [TssE]
ATGTCCGGAGCCCTGCCGCCGCTGTTCGAGCGCCTCAGCGCCGAGGCCGACGAACGTCCCGCGTTCGACGACCGGGCGCT
GGCCGAGTCGGTCCGCGGCGAGCTGCTGCGCCTGCTCAACACACGGCGCCCGGCGAATGCGCGCAGCGGCATCCTCGCCT
ACGGGCTCGCCGACTGGACCGCCGTGCAACGCCTGCGCGCCGAGGACCGGCGCCAGCTGGCGCGCGAGGTGCGGGCGGCG
GTCGAGCATTTCGAGCCGCGCCTGCAACTGGCCGAGGTCGAGGTCGAACCTGACCCGGGCAATCCGCAGCGCCTGCGTAT
CCAGCTCGGCGGCAGCCTGCGCAGCGGGTCGCGCCTGACGCCTGCGCTATTCGTCATCGAACAGGGCAGCGATGGCCTCG
AGGTGTGCCATGAGCGATTCGATTGA
ATGTCCGGAGCCCTGCCGCCGCTGTTCGAGCGCCTCAGCGCCGAGGCCGACGAACGTCCCGCGTTCGACGACCGGGCGCT
GGCCGAGTCGGTCCGCGGCGAGCTGCTGCGCCTGCTCAACACACGGCGCCCGGCGAATGCGCGCAGCGGCATCCTCGCCT
ACGGGCTCGCCGACTGGACCGCCGTGCAACGCCTGCGCGCCGAGGACCGGCGCCAGCTGGCGCGCGAGGTGCGGGCGGCG
GTCGAGCATTTCGAGCCGCGCCTGCAACTGGCCGAGGTCGAGGTCGAACCTGACCCGGGCAATCCGCAGCGCCTGCGTAT
CCAGCTCGGCGGCAGCCTGCGCAGCGGGTCGCGCCTGACGCCTGCGCTATTCGTCATCGAACAGGGCAGCGATGGCCTCG
AGGTGTGCCATGAGCGATTCGATTGA