Detailed information of component protein
Summary
| Component ID | T6CP008982 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00548  (Type i2) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | KPHS_23020 |
| Coordinate (Strand) | 2332062..2332553 (+) |
| NCBI ID | YP_005226602.1 |
| RefSeq | NC_016845 |
| Uniprot ID | A0A0H3GMC3_KLEPH |
| KEGG ID | kpm:KPHS_23020 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.5e-37 | 6..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNPAYEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNERATA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9879 | - | - |
Protein sequence: 164 a.a.
>T6CP008982 NC_016845:2332062-2332553 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssD]
MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQ
TLKSAEFKWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNPAYEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNER
ATA*
MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQ
TLKSAEFKWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNPAYEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNER
ATA*
Nucleotide sequence: 492 bp
>T6CP008982 NC_016845:2332062-2332553 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssD]
ATGGCAATTCCTGTTTATCTTTGGCTGAAAGACGACGGCGGCGCGGACATTAAAGGGTCTGTCGACGTTCAGGATCGTGA
AGGCAGTATCGAAGTGGTGGCTCAGGAGCATAACCTGTACATCCCGACCGATAACAACACCGGCAAACTGACCGGCACGC
GTATTCATACGCCGTTCCTGTTCACCAAGGAGATCGACTCCTCCAGCCCCTACCTGTACAAGGCAGTGACCACCGGCCAG
ACCCTGAAATCCGCTGAGTTCAAGTGGTACCGAATCAACGATGCCGGCCAGGAAGTGGAGTATTTCAATACCAAACTTGA
GAACGTCAAGGTGGTGAAAGTGAATCCCCTGATGCACGACATCAAAAACCCCGCCTACGAGAAGCACAACCATCTGGAAC
AGATTGAGCTGCGCTACGAGAAGATCACCTGGACCTATAAAGACGGCAACATCATTCACTCCGATAGCTGGAACGAACGC
GCCACCGCGTAA
ATGGCAATTCCTGTTTATCTTTGGCTGAAAGACGACGGCGGCGCGGACATTAAAGGGTCTGTCGACGTTCAGGATCGTGA
AGGCAGTATCGAAGTGGTGGCTCAGGAGCATAACCTGTACATCCCGACCGATAACAACACCGGCAAACTGACCGGCACGC
GTATTCATACGCCGTTCCTGTTCACCAAGGAGATCGACTCCTCCAGCCCCTACCTGTACAAGGCAGTGACCACCGGCCAG
ACCCTGAAATCCGCTGAGTTCAAGTGGTACCGAATCAACGATGCCGGCCAGGAAGTGGAGTATTTCAATACCAAACTTGA
GAACGTCAAGGTGGTGAAAGTGAATCCCCTGATGCACGACATCAAAAACCCCGCCTACGAGAAGCACAACCATCTGGAAC
AGATTGAGCTGCGCTACGAGAAGATCACCTGGACCTATAAAGACGGCAACATCATTCACTCCGATAGCTGGAACGAACGC
GCCACCGCGTAA