Detailed information of component protein
Summary
| Component ID | T6CP008981 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00548  (Type i2) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon | chromosome |
| Sequence | Protein sequence (230 a.a.); Nucleotide sequence (690 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | KPHS_23000 |
| Coordinate (Strand) | 2329665..2330354 (+) |
| NCBI ID | YP_005226600.1 |
| RefSeq | NC_016845 |
| Uniprot ID | A0A0H3GNR3_KLEPH |
| KEGG ID | kpm:KPHS_23000 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 8e-30 | 14..215 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-229 | VNEPKRGNAASIDIDALLQNTWLQVISLRHGPQFRDEEGYTLWQRCIADVERVQHELKASGLDDVSCQHILTAQCALLDEAVKGRGVEDEACLQWYDIPLQGHFLGTMDAGDTLCERMRDVLREPAPNLAVVTCFQRVMLLGFIGSFRSLHDPERLKLVNALGERVPPFQCPATAPVLVESRAGLGISGWLAPWPVRIGLSVVVVLALWWGLNHWLDHLLLTLLPGEVK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9975 | - | - |
Protein sequence: 230 a.a.
>T6CP008981 NC_016845:2329665-2330354 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssL]
VNEPKRGNAASIDIDALLQNTWLQVISLRHGPQFRDEEGYTLWQRCIADVERVQHELKASGLDDVSCQHILTAQCALLDE
AVKGRGVEDEACLQWYDIPLQGHFLGTMDAGDTLCERMRDVLREPAPNLAVVTCFQRVMLLGFIGSFRSLHDPERLKLVN
ALGERVPPFQCPATAPVLVESRAGLGISGWLAPWPVRIGLSVVVVLALWWGLNHWLDHLLLTLLPGEVK*
VNEPKRGNAASIDIDALLQNTWLQVISLRHGPQFRDEEGYTLWQRCIADVERVQHELKASGLDDVSCQHILTAQCALLDE
AVKGRGVEDEACLQWYDIPLQGHFLGTMDAGDTLCERMRDVLREPAPNLAVVTCFQRVMLLGFIGSFRSLHDPERLKLVN
ALGERVPPFQCPATAPVLVESRAGLGISGWLAPWPVRIGLSVVVVLALWWGLNHWLDHLLLTLLPGEVK*
Nucleotide sequence: 690 bp
>T6CP008981 NC_016845:2329665-2330354 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssL]
GTGAATGAGCCTAAACGCGGCAACGCCGCGTCCATTGATATTGATGCGCTGCTGCAGAACACCTGGCTGCAGGTTATCAG
CCTGCGCCACGGCCCGCAGTTCCGCGATGAGGAAGGGTACACGCTATGGCAGCGCTGTATTGCTGATGTCGAGCGCGTGC
AACATGAGCTGAAGGCGAGCGGGCTTGATGACGTCAGCTGTCAGCATATTCTCACCGCCCAGTGCGCGCTGCTCGATGAA
GCAGTGAAAGGTCGCGGCGTGGAGGATGAGGCCTGCCTGCAGTGGTATGACATTCCGCTGCAGGGGCACTTCCTCGGCAC
CATGGACGCCGGCGACACCCTGTGCGAGCGGATGCGTGATGTGTTGCGTGAACCGGCGCCCAACCTGGCCGTGGTCACCT
GTTTTCAGCGGGTGATGCTGCTGGGTTTTATTGGCAGCTTTCGCTCCCTCCACGACCCCGAGCGCCTGAAGCTGGTCAAC
GCGCTCGGTGAGCGTGTTCCTCCTTTTCAGTGCCCGGCTACCGCTCCCGTACTGGTAGAGAGTCGCGCCGGTCTGGGGAT
AAGCGGCTGGCTGGCCCCATGGCCGGTACGTATTGGCCTGAGCGTGGTGGTGGTACTCGCCCTGTGGTGGGGACTCAACC
ACTGGCTCGATCACCTGCTGCTGACCTTGTTACCGGGGGAGGTGAAATGA
GTGAATGAGCCTAAACGCGGCAACGCCGCGTCCATTGATATTGATGCGCTGCTGCAGAACACCTGGCTGCAGGTTATCAG
CCTGCGCCACGGCCCGCAGTTCCGCGATGAGGAAGGGTACACGCTATGGCAGCGCTGTATTGCTGATGTCGAGCGCGTGC
AACATGAGCTGAAGGCGAGCGGGCTTGATGACGTCAGCTGTCAGCATATTCTCACCGCCCAGTGCGCGCTGCTCGATGAA
GCAGTGAAAGGTCGCGGCGTGGAGGATGAGGCCTGCCTGCAGTGGTATGACATTCCGCTGCAGGGGCACTTCCTCGGCAC
CATGGACGCCGGCGACACCCTGTGCGAGCGGATGCGTGATGTGTTGCGTGAACCGGCGCCCAACCTGGCCGTGGTCACCT
GTTTTCAGCGGGTGATGCTGCTGGGTTTTATTGGCAGCTTTCGCTCCCTCCACGACCCCGAGCGCCTGAAGCTGGTCAAC
GCGCTCGGTGAGCGTGTTCCTCCTTTTCAGTGCCCGGCTACCGCTCCCGTACTGGTAGAGAGTCGCGCCGGTCTGGGGAT
AAGCGGCTGGCTGGCCCCATGGCCGGTACGTATTGGCCTGAGCGTGGTGGTGGTACTCGCCCTGTGGTGGGGACTCAACC
ACTGGCTCGATCACCTGCTGCTGACCTTGTTACCGGGGGAGGTGAAATGA