Detailed information of component protein


Summary

Component ID T6CP008713
Component protein type TssA
T6SS ID (Type) T6SS00302 insolico (Type i1)
Strain Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Replicon chromosome
Sequence Protein sequence (471 a.a.); Nucleotide sequence (1413 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SED_RS06255
Coordinate (Strand) 1211580..1212992 (-)
NCBI ID 446287948
RefSeq NC_011205
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 2e-72 223..465
ImpA_N PF06812.14 7.5e-07 26..114
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-470 MDLRDPNTWISHLLENLPDDKLACALKDDDPDWEYIDGEMLKLGSLAHSQLDIPEIQRRGLVILASESKDFRLLAHLLRTLQHAGDPLLALRLLALYVEHYWTVAAPQNAAHKQRFATQVLKRFETGVESFAETARTAQRDSLLAELAKLAQRWQEQNIPALAQAVDDLSSQYRRAFRGAAPVPPAAGPSTPPAPVSATPSAPVSPSAPAATTAPPVDIDSHDDKAWRDTLLKVAAILCERQPDSPQGYRLRRHALWQAITSVPQAESDGRTPLAAVPADMTADYQARLNNADLALWQQVEKSLLLAPYWLDGHYLSAQAAQRLGYTSAAEAIRDEVVRFLARLPQLATLLFNDRTPFISEQTKQWLAASPGSQTAPMVRTSEDTEAVRQCFSEQGLEATLRYLETLPEGDPRDRFHRQYLGAQLLEEAGMAQLAQQQYRMLFKAGLRMTLAEWEPSLLEQLENKLTAEQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9945 - -


  Protein sequence: 471 a.a.    

>T6CP008713 NC_011205:c1212992-1211580 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssA]
MDLRDPNTWISHLLENLPDDKLACALKDDDPDWEYIDGEMLKLGSLAHSQLDIPEIQRRGLVILASESKDFRLLAHLLRT
LQHAGDPLLALRLLALYVEHYWTVAAPQNAAHKQRFATQVLKRFETGVESFAETARTAQRDSLLAELAKLAQRWQEQNIP
ALAQAVDDLSSQYRRAFRGAAPVPPAAGPSTPPAPVSATPSAPVSPSAPAATTAPPVDIDSHDDKAWRDTLLKVAAILCE
RQPDSPQGYRLRRHALWQAITSVPQAESDGRTPLAAVPADMTADYQARLNNADLALWQQVEKSLLLAPYWLDGHYLSAQA
AQRLGYTSAAEAIRDEVVRFLARLPQLATLLFNDRTPFISEQTKQWLAASPGSQTAPMVRTSEDTEAVRQCFSEQGLEAT
LRYLETLPEGDPRDRFHRQYLGAQLLEEAGMAQLAQQQYRMLFKAGLRMTLAEWEPSLLEQLENKLTAEQ*

  Nucleotide sequence: 1413 bp    

>T6CP008713 NC_011205:c1212992-1211580 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssA]
ATGGACTTACGCGACCCGAATACCTGGATTTCGCACCTGCTGGAAAATCTGCCGGATGACAAACTGGCCTGCGCGCTGAA
AGACGATGATCCTGACTGGGAATATATCGACGGCGAAATGCTTAAACTCGGCTCGCTGGCGCACAGTCAGCTGGATATCC
CGGAAATTCAGCGCCGGGGGCTGGTGATTCTGGCCTCGGAAAGCAAGGATTTTCGCCTGCTGGCCCATCTGCTGCGCACC
CTGCAACATGCCGGCGATCCGCTGCTGGCGCTGCGTCTGCTGGCGCTGTACGTGGAGCATTACTGGACGGTGGCGGCACC
ACAAAATGCGGCACATAAACAGCGTTTCGCCACCCAGGTGCTGAAACGCTTTGAAACCGGCGTGGAGAGTTTCGCAGAGA
CAGCCCGTACCGCGCAGCGCGACAGCCTGCTGGCTGAACTGGCGAAACTGGCGCAGCGCTGGCAGGAGCAGAATATCCCG
GCGCTGGCACAGGCCGTCGATGACCTCTCGTCGCAGTATCGCCGGGCATTTCGCGGGGCCGCCCCGGTGCCGCCAGCGGC
TGGCCCGTCCACGCCTCCGGCTCCGGTTTCGGCCACGCCGTCCGCCCCGGTATCCCCGTCTGCGCCTGCGGCGACGACGG
CGCCACCGGTGGATATCGACAGCCATGACGACAAAGCCTGGCGCGACACGCTGCTGAAAGTGGCCGCCATTCTCTGTGAG
CGCCAGCCGGATTCACCGCAGGGCTACCGCCTGCGCCGCCATGCGTTATGGCAGGCCATTACATCCGTCCCCCAGGCCGA
AAGCGACGGGCGCACACCGCTGGCGGCGGTGCCTGCCGACATGACCGCCGATTACCAGGCGCGGCTGAACAACGCCGATC
TGGCGCTCTGGCAACAGGTGGAAAAAAGCCTGCTGCTGGCCCCGTACTGGCTCGATGGTCATTACCTTTCAGCGCAGGCC
GCACAACGCCTGGGCTACACCAGCGCGGCAGAAGCCATCCGGGATGAGGTGGTTCGCTTTCTCGCCCGCCTGCCGCAACT
TGCCACCCTGCTGTTTAATGACCGCACACCGTTTATCAGCGAACAGACAAAACAGTGGCTGGCGGCGTCTCCGGGCAGTC
AGACAGCCCCGATGGTGCGGACCAGTGAAGACACCGAGGCCGTCCGCCAGTGTTTCAGCGAGCAGGGGCTGGAGGCCACG
CTGCGATACTTGGAAACCCTGCCGGAAGGCGATCCGCGCGATCGGTTCCACCGGCAGTATCTTGGCGCGCAACTGTTAGA
AGAAGCCGGGATGGCGCAACTGGCACAGCAACAGTACCGGATGTTGTTTAAAGCAGGGCTGCGCATGACGCTGGCTGAAT
GGGAGCCGTCCCTGCTGGAACAACTGGAAAACAAACTCACGGCAGAACAGTAA