Detailed information of component protein


Summary

Component ID T6CP008712
Component protein type TssA
T6SS ID (Type) T6SS00302 insolico (Type i1)
Strain Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Replicon chromosome
Sequence Protein sequence (455 a.a.); Nucleotide sequence (1365 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SED_RS06245
Coordinate (Strand) 1206665..1208029 (-)
NCBI ID 445998211
RefSeq NC_011205
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 3.1e-24 292..437
ImpA_N PF06812.14 2.8e-22 12..113
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-242 MSQDALTHIIVTGQDPRGLPEFSALREEINKSSHPSQPELNWKLVESLALAIFKAHGVDLHTATYYTLARTRTHGLAGFCEGVELLAAMISHDWDKFWPQDESARTGMLDWLNSRTGNILRQQLSFSGADLPLLYRTERALQLICDKLQQVELKRQPHVENLLYFVQNTRKRLEPPPKSSVDIPPQTTVRTLIYAPESTQPLTAENLPPLPELPEMKVEVHHGAVEDPEPVARATSGRTIKG
Transmembrane helix 243-262 FMAGVVCAAAVAAALWWWQV
Outside 263-454 YPMQQQLAQVRDTAQGAAMLWLASPELDSYGQRLQQLPDASPLQLLEAGMQMMHTADSRWPESLQQQQATAQWNEILKTRAQSSPQMRGWQQARQNLRDFADLMMQRETEKQGFTLSYIKTVTWQAERLLNQETPLESLLTQYQDARAQGRNAEVLEKQINERLDGVLSRWLLLKNNVVPETATKAPPENNS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9940 - -


  Protein sequence: 455 a.a.    

>T6CP008712 NC_011205:c1208029-1206665 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssA]
MSQDALTHIIVTGQDPRGLPEFSALREEINKSSHPSQPELNWKLVESLALAIFKAHGVDLHTATYYTLARTRTHGLAGFC
EGVELLAAMISHDWDKFWPQDESARTGMLDWLNSRTGNILRQQLSFSGADLPLLYRTERALQLICDKLQQVELKRQPHVE
NLLYFVQNTRKRLEPPPKSSVDIPPQTTVRTLIYAPESTQPLTAENLPPLPELPEMKVEVHHGAVEDPEPVARATSGRTI
KGFMAGVVCAAAVAAALWWWQVYPMQQQLAQVRDTAQGAAMLWLASPELDSYGQRLQQLPDASPLQLLEAGMQMMHTADS
RWPESLQQQQATAQWNEILKTRAQSSPQMRGWQQARQNLRDFADLMMQRETEKQGFTLSYIKTVTWQAERLLNQETPLES
LLTQYQDARAQGRNAEVLEKQINERLDGVLSRWLLLKNNVVPETATKAPPENNS*

  Nucleotide sequence: 1365 bp    

>T6CP008712 NC_011205:c1208029-1206665 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssA]
ATGAGTCAGGACGCACTCACGCACATTATTGTTACCGGCCAGGATCCGCGCGGCCTGCCGGAGTTCAGCGCCCTGCGGGA
AGAGATCAACAAATCGTCTCACCCGTCGCAGCCGGAGCTGAACTGGAAACTGGTGGAATCGCTGGCGCTGGCCATTTTTA
AAGCCCATGGCGTGGATCTGCACACGGCCACTTATTACACCCTGGCGCGCACCCGCACGCACGGCCTGGCCGGATTTTGC
GAAGGGGTGGAGCTACTGGCGGCCATGATAAGCCACGACTGGGACAAATTCTGGCCGCAGGATGAGTCAGCCCGCACCGG
GATGCTTGACTGGCTTAATTCGCGCACCGGCAATATTCTGCGCCAGCAGCTGTCCTTCTCCGGCGCGGACCTGCCGTTGC
TGTACCGCACCGAACGGGCGTTACAGTTGATTTGCGACAAACTCCAGCAGGTGGAACTGAAACGCCAGCCGCATGTGGAG
AACCTGCTTTATTTTGTGCAGAACACACGTAAGCGGCTTGAGCCGCCGCCGAAAAGCAGCGTGGACATTCCGCCGCAGAC
CACCGTCAGAACGTTGATCTACGCCCCGGAGAGCACGCAGCCCCTCACGGCGGAAAACCTTCCGCCCCTGCCTGAGTTGC
CGGAAATGAAGGTGGAAGTCCACCACGGCGCGGTGGAGGATCCAGAGCCTGTCGCCAGGGCCACGTCAGGCCGGACTATA
AAAGGCTTTATGGCCGGTGTCGTCTGCGCTGCGGCTGTCGCAGCCGCACTCTGGTGGTGGCAGGTGTACCCGATGCAACA
GCAACTGGCGCAGGTAAGGGACACGGCGCAGGGCGCGGCAATGCTCTGGCTGGCCTCGCCTGAACTGGACAGCTACGGGC
AGCGGTTACAACAGCTTCCCGACGCCTCGCCGCTGCAACTGCTGGAGGCGGGGATGCAGATGATGCATACCGCAGACAGC
CGCTGGCCGGAGAGTCTGCAACAGCAGCAGGCAACAGCGCAGTGGAATGAAATCCTGAAAACCCGCGCGCAAAGCAGCCC
ACAAATGCGCGGCTGGCAGCAGGCGCGCCAGAATCTGCGTGACTTTGCTGACCTGATGATGCAGCGGGAAACGGAGAAGC
AGGGCTTTACCCTCTCCTATATTAAAACGGTGACCTGGCAGGCGGAACGCCTGCTGAACCAGGAAACGCCGCTGGAGTCC
CTGCTGACGCAGTACCAAGATGCCCGCGCTCAGGGACGGAATGCGGAGGTGCTGGAAAAACAAATTAATGAACGGCTGGA
TGGGGTGTTAAGCCGCTGGCTGTTGCTGAAAAACAATGTAGTGCCGGAAACGGCAACTAAAGCCCCCCCCGAAAATAATA
GTTAA