Detailed information of component protein


Summary

Component ID T6CP008692
Component protein type TssA
T6SS ID (Type) T6SS00272 experimental (Type i1)
Strain Proteus mirabilis HI4320
Replicon chromosome
Sequence Protein sequence (488 a.a.); Nucleotide sequence (1464 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PMI_RS03625
Coordinate (Strand) 815026..816489 (-)
NCBI ID WP_012367720.1
RefSeq NC_010554
Uniprot ID B4ET49_PROMH
KEGG ID pmr:PMI0737
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 3.9e-71 223..472
ImpA_N PF06812.14 5.6e-13 19..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-487 MMNNTSYAWKQQLLTALDEQQVSSAVNDNDADWEYIDSEMIKFGSLSHGQLDIKEIQRRCLHLFETQTKDFRILVHLLRTLQHAGEPKELVLAAQILTDFNRQYWQSCYPTNMKLKSRLANQVLKRFETASESFCHAANSAMRDDILGSFAFLAQFWHEQSPALAEQIDDLSRDYNRIENNDAPIIVASPVEKEEKVQTPPVSESIETPTKNSLTPTINVNHQDERQWKQTLLQVADVICQQAPESSVGYRIRRYAIWHAITVLPQANAQGKTPLAPVSIDRVMDYKAQLTQASITLLNNIEQSLSLSPYWLEGHMLAAQVAAKLGYGEVESGIIEELRIFLARLPELVNLHFSDMTPFFPESVQQWLEQYNQTENGQLPPSNTNTAILEQEVLQCYEQQGLEAALKLIELNLASRSEPRDRFYGQLLSAQLFELSGMDYMATQLYQQLNTSASHYSLADWEPNLIRQLMQKIDKKTEITMTMDRDQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9852 - -


  Protein sequence: 488 a.a.    

>T6CP008692 NC_010554:c816489-815026 [Proteus mirabilis HI4320] [TssA]
MMNNTSYAWKQQLLTALDEQQVSSAVNDNDADWEYIDSEMIKFGSLSHGQLDIKEIQRRCLHLFETQTKDFRILVHLLRT
LQHAGEPKELVLAAQILTDFNRQYWQSCYPTNMKLKSRLANQVLKRFETASESFCHAANSAMRDDILGSFAFLAQFWHEQ
SPALAEQIDDLSRDYNRIENNDAPIIVASPVEKEEKVQTPPVSESIETPTKNSLTPTINVNHQDERQWKQTLLQVADVIC
QQAPESSVGYRIRRYAIWHAITVLPQANAQGKTPLAPVSIDRVMDYKAQLTQASITLLNNIEQSLSLSPYWLEGHMLAAQ
VAAKLGYGEVESGIIEELRIFLARLPELVNLHFSDMTPFFPESVQQWLEQYNQTENGQLPPSNTNTAILEQEVLQCYEQQ
GLEAALKLIELNLASRSEPRDRFYGQLLSAQLFELSGMDYMATQLYQQLNTSASHYSLADWEPNLIRQLMQKIDKKTEIT
MTMDRDQ*

  Nucleotide sequence: 1464 bp    

>T6CP008692 NC_010554:c816489-815026 [Proteus mirabilis HI4320] [TssA]
ATGATGAACAATACTTCTTATGCATGGAAACAACAGCTACTGACAGCACTTGATGAACAGCAAGTCAGTAGTGCTGTCAA
TGATAATGATGCCGACTGGGAATATATTGACAGTGAAATGATAAAGTTCGGCTCACTTAGTCATGGTCAATTAGATATTA
AAGAGATCCAGCGTCGCTGTTTACACCTATTTGAAACGCAGACTAAAGATTTTCGGATCTTAGTCCATTTATTACGTACT
TTACAGCATGCTGGAGAGCCAAAAGAATTAGTATTGGCAGCACAGATCCTAACTGATTTTAATCGTCAATATTGGCAAAG
TTGCTACCCAACCAATATGAAATTGAAATCACGTTTAGCCAATCAAGTTTTGAAACGTTTTGAAACAGCGAGTGAGAGTT
TTTGTCATGCAGCCAACAGCGCGATGCGTGATGATATTCTAGGCTCGTTCGCCTTTCTAGCGCAATTTTGGCATGAACAA
AGCCCGGCACTTGCAGAACAAATTGATGATTTAAGCAGAGATTATAATCGTATTGAAAATAACGATGCGCCGATTATTGT
TGCTTCACCTGTCGAGAAAGAAGAAAAAGTACAGACTCCGCCGGTTAGCGAGTCTATAGAAACACCGACAAAAAATAGCT
TAACACCAACTATTAACGTTAACCATCAAGATGAAAGACAATGGAAACAAACATTACTTCAAGTAGCTGATGTTATCTGC
CAACAAGCCCCTGAAAGTTCAGTAGGATATCGTATACGGCGTTATGCAATTTGGCACGCTATTACGGTCTTACCTCAAGC
TAATGCTCAAGGTAAAACGCCTTTAGCCCCCGTATCAATTGACCGTGTAATGGATTACAAAGCTCAACTGACTCAAGCGT
CCATTACGCTATTAAACAATATTGAACAGAGTCTCTCACTCTCTCCTTACTGGTTAGAAGGCCATATGTTAGCTGCACAA
GTAGCAGCTAAATTAGGTTATGGGGAAGTAGAAAGTGGCATTATTGAAGAGTTACGTATTTTTTTAGCGCGTCTTCCTGA
ACTTGTTAACTTGCACTTTTCGGATATGACACCCTTCTTTCCTGAAAGTGTACAACAGTGGTTAGAGCAATATAACCAAA
CTGAAAACGGTCAATTGCCACCATCGAATACGAATACTGCAATCCTAGAGCAAGAGGTCTTGCAATGTTATGAGCAACAA
GGTCTTGAAGCAGCCCTGAAGCTTATTGAATTAAACCTTGCTAGCAGATCAGAGCCTAGAGATAGATTTTATGGACAATT
ATTGTCTGCACAACTATTTGAATTGTCAGGTATGGATTATATGGCTACACAGTTATACCAACAACTTAATACCTCTGCCT
CACATTATTCACTTGCAGATTGGGAACCCAACTTAATACGACAACTCATGCAAAAAATAGACAAAAAGACAGAAATAACA
ATGACTATGGATAGGGATCAATAA