Detailed information of component protein


Summary

Component ID T6CP008678
Component protein type TssA
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (436 a.a.); Nucleotide sequence (1308 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS23295
Coordinate (Strand) 438259..439566 (+)
NCBI ID WP_012303456.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 3.3e-59 282..428
ImpA_N PF06812.14 3e-23 12..113
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-226 MSDTPQHIIIKTGTDPRNRPEFNAIREEINKINHPARPEVNWGLIESLALTLFRTHGVDLQTAVYYTLARTQKNGLAGFTEGCELLAGMVVGQWDHLWPEQPQARSEILEWFNTRVSNQLRQHDFTRDDLRLVYRAERALQLLYDKLQQVELKRVPRIENLLYLMQNTAKKLESASDAAKAQQTAAPLKMPPMVYLSVPEAEPVRTAAPEPAANIEVRSPPPETKR
Transmembrane helix 227-249 GAVLWGFGAGVLCSLLVATAVYV
Outside 250-435 TQFKPLQQQMTVLATQPESAALLWLNRPDVATYGEQLSTLENLSPLFVLNTADQSVAMARQRWPSDPSQVAESQRWARLVEARIGLAGTDSSYFQLQQRLHALSEKLLEQERSRGSLTISYLKTAVYQMQTELNREIPLEELLRQLAVSADEHQPASPVLIKQIDDRWNALLSRYHHLTQQTNSAR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9949 - -


  Protein sequence: 436 a.a.    

>T6CP008678 NC_010465:438259-439566 [Yersinia pseudotuberculosis YPIII] [TssA]
MSDTPQHIIIKTGTDPRNRPEFNAIREEINKINHPARPEVNWGLIESLALTLFRTHGVDLQTAVYYTLARTQKNGLAGFT
EGCELLAGMVVGQWDHLWPEQPQARSEILEWFNTRVSNQLRQHDFTRDDLRLVYRAERALQLLYDKLQQVELKRVPRIEN
LLYLMQNTAKKLESASDAAKAQQTAAPLKMPPMVYLSVPEAEPVRTAAPEPAANIEVRSPPPETKRGAVLWGFGAGVLCS
LLVATAVYVTQFKPLQQQMTVLATQPESAALLWLNRPDVATYGEQLSTLENLSPLFVLNTADQSVAMARQRWPSDPSQVA
ESQRWARLVEARIGLAGTDSSYFQLQQRLHALSEKLLEQERSRGSLTISYLKTAVYQMQTELNREIPLEELLRQLAVSAD
EHQPASPVLIKQIDDRWNALLSRYHHLTQQTNSAR*

  Nucleotide sequence: 1308 bp    

>T6CP008678 NC_010465:438259-439566 [Yersinia pseudotuberculosis YPIII] [TssA]
ATGAGTGACACCCCGCAACATATCATCATTAAAACCGGCACTGACCCACGGAACCGGCCGGAATTTAACGCCATTCGTGA
AGAGATCAACAAAATCAACCACCCGGCACGGCCAGAGGTCAACTGGGGTTTGATTGAATCACTGGCGCTGACCCTGTTCC
GTACCCACGGCGTGGATTTGCAGACGGCGGTGTATTACACGCTGGCCCGCACCCAAAAAAATGGCCTGGCCGGTTTCACC
GAGGGCTGCGAGTTGCTGGCCGGTATGGTGGTCGGCCAGTGGGATCACCTGTGGCCGGAACAGCCGCAGGCACGCAGTGA
AATACTGGAATGGTTCAATACCCGCGTCAGCAATCAACTGCGTCAGCATGATTTTACCCGTGACGATCTTCGGCTAGTGT
ACCGCGCCGAGCGGGCCTTGCAGTTGCTGTACGATAAATTGCAACAGGTTGAATTAAAAAGGGTACCGCGCATTGAAAAC
CTGCTGTACCTGATGCAGAACACCGCCAAAAAACTCGAATCGGCCAGTGACGCGGCGAAGGCTCAGCAAACTGCGGCCCC
GCTGAAAATGCCGCCTATGGTCTATCTCTCGGTACCCGAGGCCGAGCCTGTCCGGACGGCAGCCCCTGAGCCTGCGGCCA
ATATTGAGGTGCGTTCGCCCCCCCCGGAGACCAAACGGGGGGCGGTGCTGTGGGGCTTTGGTGCCGGTGTCCTGTGTAGT
TTACTGGTGGCGACTGCGGTTTACGTTACCCAGTTCAAACCGCTGCAACAGCAAATGACGGTGCTGGCCACCCAACCGGA
AAGCGCGGCATTGCTGTGGCTCAACCGCCCGGATGTCGCCACCTATGGTGAGCAACTGAGCACCCTGGAAAACCTCTCGC
CCCTGTTTGTGCTCAATACCGCCGACCAGTCGGTGGCGATGGCTCGTCAACGCTGGCCGTCCGATCCCAGTCAGGTGGCC
GAAAGCCAGCGCTGGGCGCGGTTGGTGGAGGCGCGTATCGGCCTGGCCGGTACCGACAGCAGCTATTTCCAGCTCCAGCA
GCGCTTGCATGCGCTGTCTGAAAAATTACTCGAACAGGAACGTTCTCGGGGCAGTCTGACCATCTCCTATCTAAAAACAG
CAGTTTACCAGATGCAGACCGAGCTGAACCGGGAGATACCGCTGGAGGAGTTACTGCGCCAGTTGGCGGTGTCCGCCGAT
GAACATCAACCGGCCTCGCCGGTCTTGATAAAACAAATTGATGACCGCTGGAATGCCTTACTCAGCCGTTATCACCACTT
AACGCAGCAGACGAACTCTGCCCGTTAA