Detailed information of component protein


Summary

Component ID T6CP008677
Component protein type TssA
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (463 a.a.); Nucleotide sequence (1389 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS01995
Coordinate (Strand) 433181..434569 (+)
NCBI ID WP_012303455.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 5.3e-77 215..455
ImpA_N PF06812.14 8e-12 15..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-462 MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQAMALLSQKSKDFRLVVHLLRTLQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFAQQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSREPGLAKEVDALRSRYARPPERVIEAVASDEPLSSNTLAAAMATTPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAIGFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLAPYWLDGHVLSAQIALQLGYDAVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWLQQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQSEPRDRFYHQLLSAQLFEKAGLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8049 - -


  Protein sequence: 463 a.a.    

>T6CP008677 NC_010465:433181-434569 [Yersinia pseudotuberculosis YPIII] [TssA]
MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQAMALLSQKSKDFRLVVHLLRT
LQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFAQQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSR
EPGLAKEVDALRSRYARPPERVIEAVASDEPLSSNTLAAAMATTPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAI
GFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLAPYWLDGHVLSAQIALQLGYD
AVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWLQQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQ
SEPRDRFYHQLLSAQLFEKAGLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP*

  Nucleotide sequence: 1389 bp    

>T6CP008677 NC_010465:433181-434569 [Yersinia pseudotuberculosis YPIII] [TssA]
ATGGATATCACGTCACAACATCCCTGGCATGTCTTGTTACAAGCCCCTTTGTCACCTGAGCAGACCGCACAAGCCCTGGC
CGATGATGACCCCCAATGGGAATATATCGACGGCCAGATGGTGAAACTGGGGTCATTGGCCCACGCCACGCTGAATATTG
ATGATATTCAGCAACAAGCCATGGCGCTGTTATCACAGAAAAGTAAAGACTTCCGGCTCGTGGTGCATCTACTGCGCACC
CTACAACACGGGGGCCAGCCAGATGAATTGATGCTGGCGATGTCATTGCTGACTGAATACGTCCAGCTATTTTGGACTAC
GGCCTGGCCGCAAAATCCTTTACACAAACGGCGCTTTGCTCAACAAATCCTAAAACGCTTTGACAGCGCCAGCAGCAGTT
TTAGCCAGCGAGCGGACGAGGCTCAACGTGAGAATGTGCAAGGATTATTGGCACATTTAGCACAGGTTTGGCATAGCCGT
GAGCCGGGTCTGGCTAAAGAGGTGGATGCATTACGCAGCCGCTATGCGCGGCCACCGGAGCGGGTTATCGAGGCAGTGGC
TTCTGATGAACCGCTCTCATCCAACACCTTGGCGGCGGCAATGGCCACCACCCCCGTTAGCCCAAGCCTCGCCATAGATA
ACACGAGCGACAGAGCCTGGCGGCAGACCTTGCTGAAAATGGCGGATTTACTCAGCGAACAGCAACCCGATGCCGCTATC
GGTTTCCGGCTACGCCGCCATGCCGTATGGGGCGCGTTAACCGCGCCACCTATGGCGCAGAGCGATGGCCGCACTCCGTT
GGCCGCAGTTTCTGCGGATCGAACCGCCGATTACTTAGCACGTCTGGCTAATGCCGATTTGCCTTTGTGGCACCAAGTGG
AGCAGAGCCTCACCCTCGCGCCTTATTGGCTGGATGGACATGTGCTTTCGGCACAAATCGCCCTGCAACTGGGTTATGAC
GCGGTGGCACAGGCTATCCGTGATGAACTCAGCGTTTTTTTAGCCCGTATTCCCGCATTAAAAACCCTCTTTTTTACGGA
TATGACGCCATTCCTCTCCTCTGAATCTGCCGCCTGGTTACAGCAGGATGCGAATCATCAGGGAAGAAGTCGCACTATTG
AACAGGATGAAATTTGGCAATGCTATCAACAGCAAGGATTGGAAGCCGCACTACAGATGATAAACCGGCAACCACAGCAA
TCCGAACCTCGGGACCGTTTTTACCATCAATTGCTCAGTGCACAGTTGTTCGAAAAAGCAGGGTTAACCGCATTGGCACA
GCAGCACTACCACAGCTTATTACTGGTGGGGCAGCAATTACAGCTAAGCGAATGGGAACCTGCGTTGATCGCTCTACTGA
CAGAAAAACAGCGACAACTCAAACCATGA