Detailed information of component protein


Summary

Component ID T6CP008675
Component protein type TssD
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) YPK_RS01930
Coordinate (Strand) 418592..419110 (-)
NCBI ID WP_002212097.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 3.4e-33 7..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPLLYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGTSGADDWRAPIEA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9367 - -



  Protein sequence: 173 a.a.    

>T6CP008675 NC_010465:c419110-418592 [Yersinia pseudotuberculosis YPIII] [TssD]
MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPL
LYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGT
SGADDWRAPIEA*

  Nucleotide sequence: 519 bp    

>T6CP008675 NC_010465:c419110-418592 [Yersinia pseudotuberculosis YPIII] [TssD]
ATGCCAACTCCAGCTTATATCTCTATCACAGGGAAAACGCAGGGCAATATTACCGCAGGTGCTTTCACAGCTGAATCCGT
CGGTAATATCTATGTTCAAGGTCATGAAGACGAAATGTTGGTACAGGAGTTTGAGCACATTGTGACGGTGCCTACCGACC
CTCAATCCGGCCAGCCTTCCGGCCAACGTGCGCACAAACCATTGCGTTTCACTGTTGCGTACAACAAAGCCGTTCCATTG
CTGTATAACGCATTAGCCTCTGGTGAAATGCTGCCAACAGTGGAATTGAAGTGGTACCGCACCTCGATTGAAGGCAAACA
AGAGCATTTCTTCACGACTAAACTGGAAGATGCCACCATTATCGACATTGATTGTAAAATGCCGCATTGCCAGGATTCCA
CCAAGGCTGAGTTTACTCAATTAGTCCGTGTATCACTGGCATACCGCAAGATTAACTGGGATCACACCACCGCGGGCACC
TCTGGTGCTGATGACTGGCGTGCGCCGATCGAAGCGTAA