SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP008675
Component protein type	TssD
T6SS ID (Type)	T6SS00256 (Type i1)
Strain	Yersinia pseudotuberculosis YPIII
Replicon	chromosome
Sequence	Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference	[1] Zhang W, Xu S, Li J, et al. Modulation of a thermoregulated type VI secretion system by AHL-dependent quorum sensing in Yersinia pseudotuberculosis. Arch Microbiol. 2011 May;193(5):351-63. doi: 10.1007/s00203-011-0680-2. Epub 2011 Feb 5. PMID: 21298257 [2] Zhang W, Wang Y, Song Y, et al. A type VI secretion system regulated by OmpR in Yersinia pseudotuberculosis functions to maintain intracellular pH homeostasis. Environ Microbiol. 2013 Feb;15(2):557-69. doi: 10.1111/1462-2920.12005. Epub 2012 Oct 24. PMID: 23094603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	YPK_RS01930
Coordinate (Strand)	418592..419110 (-)
NCBI ID	WP_002212097.1
RefSeq	NC_010465
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	3.4e-33	7..155

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-172	MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPLLYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGTSGADDWRAPIEA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9367	-	-

Protein sequence: 173 a.a.

						>T6CP008675 NC_010465:c419110-418592 [Yersinia pseudotuberculosis YPIII] [TssD]
MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPL
LYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGT
SGADDWRAPIEA*					

Nucleotide sequence: 519 bp

						>T6CP008675 NC_010465:c419110-418592 [Yersinia pseudotuberculosis YPIII] [TssD]
ATGCCAACTCCAGCTTATATCTCTATCACAGGGAAAACGCAGGGCAATATTACCGCAGGTGCTTTCACAGCTGAATCCGT
CGGTAATATCTATGTTCAAGGTCATGAAGACGAAATGTTGGTACAGGAGTTTGAGCACATTGTGACGGTGCCTACCGACC
CTCAATCCGGCCAGCCTTCCGGCCAACGTGCGCACAAACCATTGCGTTTCACTGTTGCGTACAACAAAGCCGTTCCATTG
CTGTATAACGCATTAGCCTCTGGTGAAATGCTGCCAACAGTGGAATTGAAGTGGTACCGCACCTCGATTGAAGGCAAACA
AGAGCATTTCTTCACGACTAAACTGGAAGATGCCACCATTATCGACATTGATTGTAAAATGCCGCATTGCCAGGATTCCA
CCAAGGCTGAGTTTACTCAATTAGTCCGTGTATCACTGGCATACCGCAAGATTAACTGGGATCACACCACCGCGGGCACC
TCTGGTGCTGATGACTGGCGTGCGCCGATCGAAGCGTAA					