SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP008662
Component protein type	TssD
T6SS ID (Type)	T6SS00237 (Type i2)
Strain	Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon	chromosome
Sequence	Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference	[1] Blondel CJ, Jiménez JC, Contreras I, et al. Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes. BMC Genomics. 2009 Aug 4;10:354. doi: 10.1186/1471-2164-10-354. PMID: 19653904

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	SARI_RS12270
Coordinate (Strand)	2552577..2553068 (-)
NCBI ID	WP_001007312.1
RefSeq	NC_010067
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	3.1e-36	6..146

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 164 a.a.

						>T6CP008662 NC_010067:c2553068-2552577 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssD]
MAIPVYLWLKDDGGADIKGSVDVKDREGSIEVVAQEHTLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQ
TLKSAEFKWYKINDAGQEVEYFNTKLENVKLVKVAPKMHDIKDASFEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNER
TTA*					

Nucleotide sequence: 492 bp

						>T6CP008662 NC_010067:c2553068-2552577 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssD]
ATGGCAATCCCAGTTTATCTGTGGCTGAAAGACGATGGCGGCGCTGATATCAAGGGTTCCGTAGATGTGAAAGATCGCGA
AGGTAGCATCGAAGTTGTTGCTCAGGAACACACTCTGTACATCCCGACCGATAACAATACTGGCAAACTGACCGGCACCC
GTATTCACACGCCGTTCCTGTTTACCAAAGAAATCGACTCTTCCAGCCCGTACCTCTACAAAGCCGTGACTACGGGCCAG
ACCCTGAAGTCTGCTGAATTCAAGTGGTACAAAATCAATGACGCAGGCCAGGAAGTTGAGTATTTCAACACCAAACTGGA
AAACGTCAAACTGGTGAAAGTCGCACCGAAAATGCACGACATCAAGGATGCCTCCTTCGAGAAGCATAACCACCTTGAGC
AGATCGAGCTGCGCTACGAAAAAATCACCTGGACCTACAAAGACGGCAACATCATTCATTCCGATTCCTGGAACGAACGT
ACCACTGCGTAA					