Detailed information of component protein


Summary

Component ID T6CP008661
Component protein type TssA
T6SS ID (Type) T6SS00237 insolico (Type i2)
Strain Salmonella enterica subsp. arizonae serovar 62:z4, z23:- str. RSK2980
Replicon chromosome
Sequence Protein sequence (536 a.a.); Nucleotide sequence (1608 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SARI_RS12180
Coordinate (Strand) 2527163..2528770 (-)
NCBI ID WP_000097911.1
RefSeq NC_010067
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 2.2e-78 231..492
ImpA_N PF06812.14 1e-17 36..141
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 536 a.a.    

>T6CP008661 NC_010067:c2528770-2527163 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssA]
MSSPEDLLTACATSQEERQRLISRANDALSLWDNWLHPFTPGSETGDDPAYDDNFQLMREEINKLSGTDSTLLCELAQKC
LCECAKDIRVVTWYVQARLSRDGEKGLSEGLLLLAAMLTRYGQACHPRRPTARKAALEWLNSAKVIDALLLWPEVDSNDA
GLTAGAISLLESTVADWPEAEKPSFAGICTALENRLARSGGMEALVPQNSSTQEHGREAAHSDSPQLSAVKSGRDLLDQA
KLLSRWLSEQPQGWLASHRLIKTVRWDTVDQIPPLDSSGRTRLVPPKVEYRAQLKRLYLQKNWTELVEQASQMFCEGVNH
FWLDLQWYLWQGLSHAGHPWDAWTNSVLLDLRLLLQRLPGLEGLAWNDGTPFADEVTTAWIAEKVNEGGLLYGDEPATVV
NSQSDDVLLLESEAMEKGDAEGPEAALAWLQSRPGMDTPRHRWLIRLLMARVAEQYGRNDMALHLLGELTTSAPQLTLED
WEPALLFEVQARRLKLLRLKAGRSESDKARLMPEMDTLLAGLIAIDPARAMVLCG*

  Nucleotide sequence: 1608 bp    

>T6CP008661 NC_010067:c2528770-2527163 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] [TssA]
ATGAGTTCACCGGAAGATCTGTTAACCGCCTGCGCCACCAGCCAGGAAGAAAGGCAGCGCCTCATTTCCCGGGCAAATGA
TGCCCTGTCACTCTGGGATAACTGGCTGCACCCGTTCACCCCGGGGTCTGAAACCGGGGACGATCCTGCTTACGATGATA
ATTTTCAGCTTATGCGTGAAGAGATCAATAAGCTTTCGGGTACCGATTCAACGCTGTTGTGCGAGCTGGCCCAGAAGTGT
CTTTGCGAATGTGCCAAAGACATACGTGTTGTGACCTGGTACGTGCAGGCCCGACTCAGTCGCGACGGTGAAAAAGGGTT
GTCCGAAGGCTTACTGCTTCTTGCTGCGATGCTGACCCGCTACGGGCAGGCCTGCCATCCCCGGCGCCCCACTGCCCGGA
AAGCTGCTCTGGAGTGGCTGAACAGTGCAAAAGTGATTGATGCACTGCTGTTATGGCCCGAGGTGGACAGCAATGATGCC
GGTCTGACGGCGGGAGCCATAAGCCTGCTTGAATCCACAGTGGCAGACTGGCCGGAAGCCGAGAAACCGTCTTTTGCAGG
GATTTGTACCGCGCTTGAAAACCGCCTGGCACGTTCGGGTGGTATGGAAGCGCTGGTCCCCCAGAACAGCAGTACTCAGG
AGCACGGGCGTGAAGCTGCCCACTCGGATTCACCACAACTGTCAGCGGTGAAATCGGGCCGCGATTTACTCGACCAGGCA
AAGTTACTTTCCCGCTGGCTGAGCGAGCAGCCGCAGGGCTGGCTGGCTTCTCACCGGCTGATAAAGACCGTGCGTTGGGA
CACGGTCGATCAGATCCCTCCGCTGGACAGTAGCGGGCGCACCCGTCTGGTACCGCCGAAGGTCGAGTACCGGGCTCAAC
TCAAGCGGCTCTACCTTCAGAAAAACTGGACTGAACTGGTTGAGCAGGCCAGCCAGATGTTTTGCGAGGGAGTGAATCAT
TTCTGGCTCGATCTCCAGTGGTATCTCTGGCAGGGGCTAAGCCATGCCGGTCACCCGTGGGATGCCTGGACAAACTCCGT
CCTTCTCGATCTGCGGCTTCTTCTTCAGCGCCTTCCTGGCCTTGAAGGGCTGGCATGGAATGACGGAACTCCCTTCGCTG
ATGAAGTCACCACCGCCTGGATCGCTGAAAAAGTGAATGAGGGAGGTCTGCTGTACGGTGATGAACCCGCCACCGTTGTT
AATAGCCAGTCCGACGATGTACTGCTTCTTGAATCCGAAGCTATGGAAAAAGGTGACGCGGAAGGACCCGAGGCGGCGCT
TGCCTGGCTCCAGTCCCGACCGGGGATGGACACACCACGCCATCGCTGGCTGATACGCCTGTTGATGGCCCGGGTGGCAG
AGCAGTATGGTCGAAACGATATGGCGCTTCACCTGCTTGGCGAACTGACCACCAGTGCACCACAGCTGACGCTGGAAGAC
TGGGAACCCGCACTGTTGTTTGAAGTCCAGGCTCGCCGCCTGAAACTGCTGCGCCTGAAAGCCGGTCGCAGCGAATCCGA
TAAAGCCCGTCTGATGCCTGAGATGGATACGCTACTGGCGGGTCTGATCGCCATCGACCCGGCCCGTGCCATGGTGCTCT
GTGGTTAA