Detailed information of component protein


Summary

Component ID T6CP008636
Component protein type TssD
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) MMWYL1_RS06140
Coordinate (Strand) 1356826..1357344 (+)
NCBI ID WP_012068897.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 6.7e-31 18..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 173 a.a.    

>T6CP008636 NC_009654:1356826-1357344 [Marinomonas sp. MWYL1] [TssD]
MPTPCFISIEGESQGLITAGAMTVDSIGDVGLEGHDDEMLVQRFDHNVTVPTNPQSGNPSGQRVHKPFKFTVALNKAVPL
LYNALSSGEKLPKVELKWYRTSAEGKQENFFVTALEGAVIVDIHCEMPHCQDPAMGNFTQNLTVSMAYRKITWDHINSGT
SGSDDWSKPIEA*

  Nucleotide sequence: 519 bp    

>T6CP008636 NC_009654:1356826-1357344 [Marinomonas sp. MWYL1] [TssD]
ATGCCAACGCCATGTTTTATCTCGATCGAAGGGGAATCTCAGGGTCTTATCACTGCCGGTGCGATGACGGTTGATTCTAT
CGGTGACGTAGGCTTGGAAGGTCATGATGACGAAATGCTGGTGCAACGCTTTGACCACAACGTCACTGTACCGACTAACC
CACAGTCTGGTAACCCATCTGGTCAACGCGTACACAAGCCATTCAAATTCACCGTTGCTTTGAACAAAGCGGTTCCACTG
CTTTACAACGCACTGTCTTCTGGCGAAAAACTGCCAAAAGTGGAATTGAAATGGTACCGCACGTCTGCAGAAGGTAAACA
AGAGAACTTCTTCGTTACGGCACTAGAAGGTGCGGTTATCGTGGACATCCATTGCGAAATGCCACATTGCCAAGACCCAG
CGATGGGCAACTTCACACAGAACCTAACGGTCTCTATGGCTTACCGTAAGATCACTTGGGATCACATCAACTCTGGTACG
TCTGGTTCTGACGACTGGAGCAAGCCAATCGAAGCGTAA