SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP008636
Component protein type	TssD
T6SS ID (Type)	T6SS00216 (Type i1)
Strain	Marinomonas sp. MWYL1
Replicon	chromosome
Sequence	Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference	[1] Bernard CS, Brunet YR, Gavioli M, et al. Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol. 2011 May;193(9):2158-67. doi: 10.1128/JB.00029-11. Epub 2011 Mar 4. PMID: 21378190

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	MMWYL1_RS06140
Coordinate (Strand)	1356826..1357344 (+)
NCBI ID	WP_012068897.1
RefSeq	NC_009654
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	6.7e-31	18..155

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 173 a.a.

						>T6CP008636 NC_009654:1356826-1357344 [Marinomonas sp. MWYL1] [TssD]
MPTPCFISIEGESQGLITAGAMTVDSIGDVGLEGHDDEMLVQRFDHNVTVPTNPQSGNPSGQRVHKPFKFTVALNKAVPL
LYNALSSGEKLPKVELKWYRTSAEGKQENFFVTALEGAVIVDIHCEMPHCQDPAMGNFTQNLTVSMAYRKITWDHINSGT
SGSDDWSKPIEA*					

Nucleotide sequence: 519 bp

						>T6CP008636 NC_009654:1356826-1357344 [Marinomonas sp. MWYL1] [TssD]
ATGCCAACGCCATGTTTTATCTCGATCGAAGGGGAATCTCAGGGTCTTATCACTGCCGGTGCGATGACGGTTGATTCTAT
CGGTGACGTAGGCTTGGAAGGTCATGATGACGAAATGCTGGTGCAACGCTTTGACCACAACGTCACTGTACCGACTAACC
CACAGTCTGGTAACCCATCTGGTCAACGCGTACACAAGCCATTCAAATTCACCGTTGCTTTGAACAAAGCGGTTCCACTG
CTTTACAACGCACTGTCTTCTGGCGAAAAACTGCCAAAAGTGGAATTGAAATGGTACCGCACGTCTGCAGAAGGTAAACA
AGAGAACTTCTTCGTTACGGCACTAGAAGGTGCGGTTATCGTGGACATCCATTGCGAAATGCCACATTGCCAAGACCCAG
CGATGGGCAACTTCACACAGAACCTAACGGTCTCTATGGCTTACCGTAAGATCACTTGGGATCACATCAACTCTGGTACG
TCTGGTTCTGACGACTGGAGCAAGCCAATCGAAGCGTAA					