Detailed information of component protein


Summary

Component ID T6CP008635
Component protein type TssA
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (226 a.a.); Nucleotide sequence (678 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) MMWYL1_RS06135
Coordinate (Strand) 1355932..1356609 (+)
NCBI ID WP_012068925.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.8e-10 22..95

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 226 a.a.    

>T6CP008635 NC_009654:1355932-1356609 [Marinomonas sp. MWYL1] [TssA]
MKNVIYIENRRFYIESDSSLIRDEELYCAIKDSINRRAALPKSNFDWQSVYSDAESLAESVGVDLIIASYFTVAAFKTQG
FRGLANGLTLINSALLNQNSHDLKQQKLNKGLVDWIRKEIIIDIGSMQPSYDAMRDLYRCERECQILDDVLGSQLEMNEG
IFEEIALHLLQYIERLEMRYHRSEKVQERVVEELSKFSWNDTALVAAASLISAAFTFVVMLYWPK*

  Nucleotide sequence: 678 bp    

>T6CP008635 NC_009654:1355932-1356609 [Marinomonas sp. MWYL1] [TssA]
ATGAAAAATGTAATTTATATCGAGAATAGGCGCTTTTATATAGAGTCTGACTCCAGTCTGATTCGAGATGAAGAGCTGTA
CTGTGCTATCAAAGATAGTATTAATCGTAGAGCCGCTTTACCCAAAAGTAACTTTGATTGGCAAAGTGTTTATTCAGATG
CTGAGTCGCTGGCAGAAAGTGTTGGGGTTGATTTAATCATCGCCAGTTACTTTACCGTCGCGGCATTTAAAACTCAGGGC
TTTCGTGGGTTGGCAAACGGTCTTACCTTAATCAACTCGGCTTTATTAAATCAAAATAGCCATGATTTAAAACAGCAAAA
GTTAAATAAAGGCTTAGTAGATTGGATTAGAAAAGAAATCATCATAGATATAGGTAGCATGCAACCTAGCTATGACGCAA
TGCGAGACCTATATCGTTGTGAGCGAGAATGCCAGATCTTAGATGATGTGCTAGGCAGTCAGCTGGAAATGAATGAAGGC
ATCTTTGAAGAGATTGCATTGCATCTCCTGCAGTACATTGAGCGTCTTGAGATGCGGTATCACCGCAGTGAAAAAGTGCA
AGAGCGAGTGGTAGAAGAACTGTCAAAATTTTCTTGGAATGATACCGCGTTAGTGGCGGCTGCAAGTTTGATTAGTGCAG
CATTTACTTTTGTTGTCATGTTGTATTGGCCGAAGTGA