SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP008634
Component protein type	TssA
T6SS ID (Type)	T6SS00216 (Type i1)
Strain	Marinomonas sp. MWYL1
Replicon	chromosome
Sequence	Protein sequence (470 a.a.); Nucleotide sequence (1410 bp)
Reference	[1] Bernard CS, Brunet YR, Gavioli M, et al. Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol. 2011 May;193(9):2158-67. doi: 10.1128/JB.00029-11. Epub 2011 Mar 4. PMID: 21378190

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	MMWYL1_RS06125
Coordinate (Strand)	1350913..1352322 (+)
NCBI ID	WP_012068923.1
RefSeq	NC_009654
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VasJ	PF16989.7	1.1e-70	217..465
ImpA_N	PF06812.14	2.3e-21	12..124

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 470 a.a.

						>T6CP008634 NC_009654:1350913-1352322 [Marinomonas sp. MWYL1] [TssA]
MDINLIRTSIREPISTDQPVGESAIHDPLYEFVDDQMMKVGSLSHGSVQWKKAEESLIELLSKKTKDLKLLTYFFQCLHN
KNTPDSLTLSIFVLADFMSEYWETCFPFAGKKGNLPRRKFLGQIIQRFGLALDKLDFANFTTSERESLRTANDFWHGVAK
EQELASENVETIIEVINRKLQNSEKKHVETQSKSQPQAEYKTVEVVPSKPAIEVDYSSAKSTKQTMLKVAEFLSENENSL
ELSIRIRRYAVWSPITTLPDNVNKQTLISALPQERVKDYWSLLDSADLALWKRVEATLTVAPYWFDGQFLSYQIAEKLGY
TESAQAVLTETQRFLQRFPSLYDFTFKDGEVFVSDACRNWLEQADETNVEETNLAGDSWAEKKKMAVDLVEKEGIGAALS
MINEGISKAVEPRDNYYWRLISTELLEENKLNDLAQQQFQQLHTQVQSMSVSEWEPSLLKRVKKHITVK*					

Nucleotide sequence: 1410 bp

						>T6CP008634 NC_009654:1350913-1352322 [Marinomonas sp. MWYL1] [TssA]
ATGGACATTAATCTTATTCGAACATCGATTCGTGAGCCTATATCCACTGATCAGCCTGTTGGCGAAAGCGCTATTCATGA
TCCGCTTTATGAGTTTGTGGATGATCAAATGATGAAGGTTGGCTCTTTGTCTCATGGTTCAGTGCAATGGAAAAAAGCAG
AAGAGTCGCTAATTGAACTGCTGAGTAAAAAAACCAAGGATCTAAAACTGCTGACGTATTTTTTTCAATGCCTACACAAT
AAAAATACACCAGATAGTTTAACTTTATCCATTTTCGTTTTAGCCGATTTTATGTCGGAATATTGGGAGACATGCTTTCC
ATTCGCTGGAAAGAAAGGGAATTTACCGAGACGTAAGTTTCTTGGGCAAATTATTCAGCGTTTTGGCCTTGCTCTAGATA
AGCTGGACTTTGCCAACTTTACTACCTCAGAAAGAGAGAGTTTACGTACTGCCAATGACTTTTGGCATGGTGTTGCGAAA
GAACAGGAACTTGCTTCTGAGAATGTTGAAACCATCATCGAGGTTATTAACAGAAAGCTCCAAAACTCAGAAAAAAAGCA
TGTAGAAACGCAAAGTAAATCTCAACCTCAGGCTGAATATAAAACTGTAGAGGTCGTGCCTTCTAAACCAGCGATTGAAG
TGGATTACAGCTCTGCAAAAAGCACTAAGCAGACCATGCTGAAAGTCGCCGAATTCCTCTCGGAAAACGAAAATAGTCTG
GAATTATCCATTCGGATTAGGCGCTATGCGGTTTGGTCGCCGATTACCACATTGCCAGATAATGTGAACAAGCAAACTTT
GATTAGTGCTTTGCCGCAAGAGCGAGTGAAAGACTATTGGAGCTTGCTTGATAGTGCAGACCTAGCCTTATGGAAGCGAG
TTGAAGCCACGCTGACCGTTGCACCTTATTGGTTTGATGGGCAGTTTCTAAGCTATCAAATTGCTGAAAAATTAGGGTAC
ACGGAATCTGCTCAAGCCGTTCTAACGGAAACTCAGCGATTTCTTCAGCGTTTTCCCTCCCTGTATGATTTCACCTTTAA
AGATGGTGAAGTTTTCGTTTCTGATGCTTGTCGGAATTGGCTGGAACAAGCAGATGAAACGAATGTAGAAGAAACTAACC
TAGCTGGTGACAGCTGGGCGGAGAAAAAGAAAATGGCCGTTGATTTAGTGGAAAAAGAAGGCATTGGTGCCGCTTTATCC
ATGATCAATGAAGGGATTAGTAAAGCGGTGGAGCCAAGGGATAATTATTATTGGCGCCTTATTTCTACGGAATTATTGGA
AGAAAATAAACTAAATGATTTAGCCCAGCAGCAGTTTCAGCAACTACATACACAAGTTCAGTCAATGTCGGTTTCGGAAT
GGGAACCCTCTTTGCTCAAGCGAGTAAAGAAGCACATTACAGTCAAATAA					