Detailed information of component protein


Summary

Component ID T6CP008633
Component protein type TssE
T6SS ID (Type) T6SS00216 insolico (Type i1)
Strain Marinomonas sp. MWYL1
Replicon chromosome
Sequence Protein sequence (146 a.a.); Nucleotide sequence (438 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) MMWYL1_RS06075
Coordinate (Strand) 1338761..1339198 (+)
NCBI ID WP_012068913.1
RefSeq NC_009654
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 3.3e-13 39..124
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 146 a.a.    

>T6CP008633 NC_009654:1338761-1339198 [Marinomonas sp. MWYL1] [TssE]
MSYLIDENSVFGVSFMERLNVNAKAISLSQGPDSIDVLNSIKLNVANVLNTRLGEAQSAPNLGLIDFNDASLGAMDLSLK
VKLAVQKCLATYEPRLCNLQIKTVTDPNNPLGLCFHINADINSAALHEKVEINLILGNDRKYRVY*

  Nucleotide sequence: 438 bp    

>T6CP008633 NC_009654:1338761-1339198 [Marinomonas sp. MWYL1] [TssE]
ATGAGCTACCTAATAGATGAAAATAGTGTTTTTGGCGTTAGCTTCATGGAACGATTGAATGTTAATGCTAAGGCTATCTC
TTTGTCTCAGGGGCCAGATTCTATAGATGTTCTTAACTCAATAAAGCTGAATGTAGCCAACGTTCTGAATACTAGATTGG
GGGAGGCGCAATCCGCCCCTAATCTAGGATTGATAGATTTTAATGACGCTTCGTTGGGCGCCATGGATCTATCTTTAAAA
GTGAAGTTGGCTGTGCAGAAATGTTTAGCGACTTATGAGCCTAGATTATGCAACTTACAAATCAAAACGGTTACAGATCC
AAATAACCCTTTAGGTTTGTGTTTTCATATCAATGCTGACATCAATAGTGCTGCGCTTCATGAGAAAGTAGAGATTAATT
TAATACTTGGTAATGACCGTAAATATAGAGTGTATTAG