Detailed information of component protein


Summary

Component ID T6CP008530
Component protein type TssE
T6SS ID (Type) T6SS00155 insolico (Type i1)
Strain Escherichia coli APEC O1
Replicon chromosome
Sequence Protein sequence (142 a.a.); Nucleotide sequence (426 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) APECO1_RS01205
Coordinate (Strand) 260572..260997 (-)
NCBI ID WP_000946068.1
RefSeq NC_008563
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.3e-14 32..119
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 142 a.a.    

>T6CP008530 NC_008563:c260997-260572 [Escherichia coli APEC O1] [TssE]
MLRRDSGPTGSLFERIREAANPPSYQNPKEALIRSIRRNLRQVLNTRSGSCYGSPELGITDLNDESLASSDFRREIRKSI
SQCILHYEPRITDVVVTAAAPDEYAPVELCFHIVATVDVSETRGVFEFDILLDNHQRYCVE*

  Nucleotide sequence: 426 bp    

>T6CP008530 NC_008563:c260997-260572 [Escherichia coli APEC O1] [TssE]
ATGCTAAGACGGGATTCAGGACCAACCGGCAGTCTTTTTGAACGTATCCGTGAGGCGGCAAATCCGCCTTCATATCAGAA
TCCAAAAGAAGCACTGATACGTTCCATCAGACGTAACCTGCGACAGGTCCTGAATACCCGCTCCGGCAGTTGTTATGGTT
CACCGGAGCTGGGGATTACTGATTTAAATGATGAATCGCTGGCCTCCAGCGATTTCAGACGAGAAATCCGTAAGTCCATT
AGCCAGTGCATTTTACATTACGAACCTCGTATTACCGATGTTGTTGTTACGGCTGCTGCACCGGATGAATACGCCCCTGT
GGAACTGTGTTTTCATATTGTGGCTACGGTCGATGTCAGCGAAACCAGGGGAGTGTTTGAATTTGACATTTTGCTGGACA
ACCATCAACGCTATTGTGTGGAGTGA