SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP008528
Component protein type	TssA
T6SS ID (Type)	T6SS00155 (Type i1)
Strain	Escherichia coli APEC O1
Replicon	chromosome
Sequence	Protein sequence (453 a.a.); Nucleotide sequence (1359 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	APECO1_RS01150
Coordinate (Strand)	243904..245262 (-)
NCBI ID	WP_000073801.1
RefSeq	NC_008563
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
VasL	PF12486.10	1.3e-24	288..433
ImpA_N	PF06812.14	2e-20	12..113

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 453 a.a.

						>T6CP008528 NC_008563:c245262-243904 [Escherichia coli APEC O1] [TssA]
MSNYALTQTIVTGSDPRALPEFSAIREEINKANHPSQPELNWKLVESLALSIFKANGVDLHTATYYTLARTRNQGLAGFC
EGAELLAAMIIHEWDKFWPQSGPARTEMLDWFNTRTGNILRQQVSFSENDLSLLYRTERALQLICDKLQQVELKRQPRVE
NLLYFVQNTRKRFEPQPRNRTDTAAQTMVRTLVYAPEGTASATAETMPPLPDLPEMRVGVRGVADNADKAKQGDTVKGFV
AGAACTAVIASALWWWQAYPMQQQLTQVRDTTQGAATVWLASPVLKEYEQYLQQLLNAPPLQPLETGMQMMRTADTLWPE
SLQQQEASRMWSNTLRNRAQASPQMKGWQQARQNLRDFADLMMKKETEKQGFTLSYIKTVTWQAERLLNQETPLEYLLTQ
YQETRTQKQDTQALEKEINERLDGLLSRWLLLKNTGQDMATDNRTEPVHPTH*					

Nucleotide sequence: 1359 bp

						>T6CP008528 NC_008563:c245262-243904 [Escherichia coli APEC O1] [TssA]
ATGAGCAATTACGCACTGACACAAACTATCGTTACCGGCAGCGATCCGCGCGCCCTGCCGGAGTTCAGCGCCATCCGCGA
AGAAATTAACAAAGCTAACCACCCGTCACAGCCGGAGCTGAACTGGAAACTGGTGGAATCGCTGGCGCTGTCGATTTTTA
AGGCCAACGGGGTGGATTTGCATACCGCCACCTACTATACGCTGGCACGTACACGTAATCAGGGACTGGCAGGGTTCTGT
GAAGGCGCGGAACTGCTGGCTGCGATGATCATCCACGAATGGGATAAATTCTGGCCGCAGAGTGGTCCGGCGCGGACTGA
GATGCTGGACTGGTTCAACACCCGCACCGGGAATATCCTGCGCCAGCAGGTTTCCTTTTCCGAAAATGATCTTTCGTTGC
TCTACCGCACGGAACGGGCTTTGCAGCTTATCTGCGACAAACTCCAGCAAGTGGAACTGAAGCGCCAGCCGCGCGTGGAA
AATCTGCTTTATTTTGTGCAGAACACACGCAAGCGGTTTGAGCCGCAGCCCAGAAACCGTACTGATACGGCGGCACAGAC
CATGGTCAGAACGCTGGTCTATGCGCCTGAAGGCACGGCTTCCGCCACAGCGGAAACCATGCCCCCCCTACCCGACCTGC
CGGAAATGCGGGTGGGGGTGCGCGGTGTGGCAGATAACGCCGACAAAGCAAAACAGGGCGACACGGTAAAAGGTTTTGTT
GCCGGTGCCGCCTGTACTGCCGTTATCGCATCTGCACTCTGGTGGTGGCAGGCGTATCCGATGCAGCAGCAGCTTACACA
GGTCAGGGATACCACACAGGGAGCCGCCACCGTCTGGTTGGCATCCCCGGTACTGAAAGAATATGAACAGTACCTGCAAC
AGCTTCTGAATGCCCCGCCACTACAGCCGCTGGAAACCGGAATGCAGATGATGCGCACCGCAGACACCCTCTGGCCGGAA
AGCCTGCAACAGCAGGAAGCCAGCAGGATGTGGAGCAACACGCTGAGAAACCGGGCGCAAGCCAGTCCGCAGATGAAGGG
CTGGCAACAAGCGCGGCAGAATTTGCGGGATTTTGCAGATTTGATGATGAAGAAGGAGACGGAGAAACAGGGTTTCACCC
TATCGTATATCAAAACGGTGACCTGGCAGGCCGAACGGTTACTGAATCAAGAAACACCACTGGAGTACCTGCTGACGCAG
TACCAGGAGACCCGTACACAGAAGCAGGACACACAGGCGTTGGAAAAAGAGATCAACGAACGGCTGGACGGGCTGTTAAG
CCGCTGGCTGCTGCTGAAAAATACCGGACAGGATATGGCAACGGATAACAGAACCGAACCTGTCCATCCAACTCATTGA					