Detailed information of component protein
Summary
| Component ID | T6CP008438 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00074  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (198 a.a.); Nucleotide sequence (594 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BPS_RS21560 |
| Coordinate (Strand) | 721244..721837 (+) |
| NCBI ID | WP_004530042.1 |
| RefSeq | NC_006351 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 1.2e-12 | 35..152 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-197 | VRHKMGPFKSIAAALALGVLAGCSAFSSSKPEEPRQLHVTLVGGARLNVAPTGEPRPVQTCVYVVTAADWLPTQGGDDSSCASRGQDSTVVADSRHVIAPNQLLQFSLNLPRSGELWLVADADYARRPANYGPLRVRVEGRGLIHMAVWLDRDGIYNALLPGPVPVGGAIAPAAVRPDEPPPERKTKITYGTRRSRQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9956 | pos: 22-23. LAG-CS. | VRHKMGPFKSIAAALALGVLAG |
Protein sequence: 198 a.a.
>T6CP008438 NC_006351:721244-721837 [Burkholderia pseudomallei K96243] [TssJ]
VRHKMGPFKSIAAALALGVLAGCSAFSSSKPEEPRQLHVTLVGGARLNVAPTGEPRPVQTCVYVVTAADWLPTQGGDDSS
CASRGQDSTVVADSRHVIAPNQLLQFSLNLPRSGELWLVADADYARRPANYGPLRVRVEGRGLIHMAVWLDRDGIYNALL
PGPVPVGGAIAPAAVRPDEPPPERKTKITYGTRRSRQ*
VRHKMGPFKSIAAALALGVLAGCSAFSSSKPEEPRQLHVTLVGGARLNVAPTGEPRPVQTCVYVVTAADWLPTQGGDDSS
CASRGQDSTVVADSRHVIAPNQLLQFSLNLPRSGELWLVADADYARRPANYGPLRVRVEGRGLIHMAVWLDRDGIYNALL
PGPVPVGGAIAPAAVRPDEPPPERKTKITYGTRRSRQ*
Nucleotide sequence: 594 bp
>T6CP008438 NC_006351:721244-721837 [Burkholderia pseudomallei K96243] [TssJ]
GTGCGTCACAAGATGGGCCCCTTCAAATCGATCGCGGCGGCGCTCGCGCTCGGCGTGCTCGCCGGCTGCTCGGCCTTCTC
GTCGTCGAAGCCGGAAGAGCCGCGGCAGTTGCACGTGACGCTCGTCGGCGGCGCCCGGCTGAACGTCGCGCCGACGGGCG
AGCCGCGTCCGGTGCAGACGTGCGTGTATGTCGTGACCGCGGCCGACTGGCTGCCGACGCAGGGCGGCGACGATTCGTCG
TGCGCGTCGCGCGGGCAGGACAGCACGGTCGTCGCCGACTCGCGGCACGTGATCGCGCCGAACCAGTTGCTGCAGTTCTC
GCTGAACCTGCCGCGCTCGGGCGAGCTCTGGCTCGTCGCCGACGCCGACTACGCGCGCCGGCCGGCGAACTACGGGCCGC
TGCGCGTGCGCGTCGAGGGCCGCGGCTTGATTCACATGGCTGTCTGGCTGGACCGCGACGGCATCTACAACGCGTTGTTG
CCGGGGCCCGTGCCCGTCGGCGGCGCGATCGCCCCGGCGGCGGTCCGCCCCGACGAGCCGCCGCCCGAGCGCAAGACGAA
AATCACCTATGGGACAAGGAGAAGCAGGCAATGA
GTGCGTCACAAGATGGGCCCCTTCAAATCGATCGCGGCGGCGCTCGCGCTCGGCGTGCTCGCCGGCTGCTCGGCCTTCTC
GTCGTCGAAGCCGGAAGAGCCGCGGCAGTTGCACGTGACGCTCGTCGGCGGCGCCCGGCTGAACGTCGCGCCGACGGGCG
AGCCGCGTCCGGTGCAGACGTGCGTGTATGTCGTGACCGCGGCCGACTGGCTGCCGACGCAGGGCGGCGACGATTCGTCG
TGCGCGTCGCGCGGGCAGGACAGCACGGTCGTCGCCGACTCGCGGCACGTGATCGCGCCGAACCAGTTGCTGCAGTTCTC
GCTGAACCTGCCGCGCTCGGGCGAGCTCTGGCTCGTCGCCGACGCCGACTACGCGCGCCGGCCGGCGAACTACGGGCCGC
TGCGCGTGCGCGTCGAGGGCCGCGGCTTGATTCACATGGCTGTCTGGCTGGACCGCGACGGCATCTACAACGCGTTGTTG
CCGGGGCCCGTGCCCGTCGGCGGCGCGATCGCCCCGGCGGCGGTCCGCCCCGACGAGCCGCCGCCCGAGCGCAAGACGAA
AATCACCTATGGGACAAGGAGAAGCAGGCAATGA