Detailed information of component protein


Summary

Component ID T6CP008433
Component protein type TssD
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PLU_RS01815
Coordinate (Strand) 401704..402222 (+)
NCBI ID WP_011144762.1
RefSeq NC_005126
Uniprot ID A0A6L9JS77_PHOLM, Q7N9G3_PHOLL
KEGG ID plum:A4R40_01820, plu:plu0373
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 9.4e-34 7..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MPTPCYISITGKTQGNITAGSFTAESVGNIYVQGHEDEMLVQAFDHVVTVPTDPQSGQPSGQRAHKPFRFTVALNKSVPLLYNALASGEMLTSVVLKWYRTSVEGKQEHFFTTQLEDATIIDIDCQMPHCQDPTKAEFTQLVRVSLSYRKINWEHTTAGTSGADDWRAPIVA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9563 - -



  Protein sequence: 173 a.a.    

>T6CP008433 NC_005126:401704-402222 [Photorhabdus laumondii subsp. laumondii TTO1] [TssD]
MPTPCYISITGKTQGNITAGSFTAESVGNIYVQGHEDEMLVQAFDHVVTVPTDPQSGQPSGQRAHKPFRFTVALNKSVPL
LYNALASGEMLTSVVLKWYRTSVEGKQEHFFTTQLEDATIIDIDCQMPHCQDPTKAEFTQLVRVSLSYRKINWEHTTAGT
SGADDWRAPIVA*

  Nucleotide sequence: 519 bp    

>T6CP008433 NC_005126:401704-402222 [Photorhabdus laumondii subsp. laumondii TTO1] [TssD]
ATGCCAACTCCATGTTATATTTCTATCACCGGAAAAACACAGGGTAATATTACTGCGGGTTCATTCACTGCTGAATCAGT
GGGTAATATTTACGTTCAGGGCCACGAAGATGAAATGCTAGTTCAAGCATTTGATCATGTCGTCACCGTACCCACTGATC
CTCAATCAGGTCAGCCTTCAGGTCAGCGTGCTCATAAACCATTCCGTTTTACAGTTGCATTAAATAAATCTGTTCCATTG
CTTTATAACGCATTGGCTTCGGGTGAAATGCTGACGAGTGTAGTATTGAAATGGTATCGCACTTCTGTTGAAGGGAAACA
AGAGCATTTCTTCACGACGCAGTTGGAAGATGCCACTATTATCGACATTGATTGCCAAATGCCTCATTGTCAGGACCCAA
CAAAAGCTGAATTTACTCAGCTGGTTCGTGTTTCTCTGTCTTATCGTAAGATTAATTGGGAGCATACAACCGCAGGTACT
TCCGGCGCAGATGATTGGCGTGCACCTATTGTTGCCTGA