Detailed information of component protein


Summary

Component ID T6CP008432
Component protein type TssE
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (147 a.a.); Nucleotide sequence (441 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PLU_RS01800
Coordinate (Strand) 398357..398797 (-)
NCBI ID WP_011144759.1
RefSeq NC_005126
Uniprot ID A0A6L9JJG1_PHOLM, Q7N9G6_PHOLL
KEGG ID plu:plu0370, plum:A4R40_01805
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 3.6e-18 34..121

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-146 MAALHSWNREGSASLFERIQGKNSGSSRQSRMRELLNSIKRHLNHVLNTHPGACQSAADLGVIDLNDATTTATDFKQSIEQAIEHCITNYEPRISSVTVNAIHDDSDPLLLRFHISAQVSLDDIHDAVEFNIQLDNNRRYCLERTQ



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9727 - -



  Protein sequence: 147 a.a.    

>T6CP008432 NC_005126:c398797-398357 [Photorhabdus laumondii subsp. laumondii TTO1] [TssE]
MAALHSWNREGSASLFERIQGKNSGSSRQSRMRELLNSIKRHLNHVLNTHPGACQSAADLGVIDLNDATTTATDFKQSIE
QAIEHCITNYEPRISSVTVNAIHDDSDPLLLRFHISAQVSLDDIHDAVEFNIQLDNNRRYCLERTQ*

  Nucleotide sequence: 441 bp    

>T6CP008432 NC_005126:c398797-398357 [Photorhabdus laumondii subsp. laumondii TTO1] [TssE]
ATGGCTGCGCTGCACAGTTGGAATAGAGAAGGCTCTGCCAGCCTGTTCGAGCGTATTCAGGGGAAGAACTCTGGTTCTTC
CCGCCAATCAAGAATGCGTGAGCTGCTCAACTCCATAAAACGGCACCTGAATCATGTTCTCAATACTCATCCGGGTGCCT
GTCAGAGTGCGGCTGATCTTGGCGTCATTGATCTCAATGACGCTACAACCACGGCAACTGACTTTAAACAGAGTATTGAG
CAAGCAATAGAGCACTGCATCACAAATTATGAACCAAGAATATCGTCAGTCACTGTCAATGCAATCCACGATGATAGTGA
TCCGCTGTTGTTACGTTTTCACATCAGCGCCCAGGTATCCCTGGATGATATTCATGACGCTGTTGAATTTAATATTCAAC
TGGATAACAACCGGCGTTATTGCCTAGAGAGGACTCAATAA