Detailed information of component protein
Summary
| Component ID | T6CP008416 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS00022  (Type Unknown) |
| Strain | Yersinia pestis CO92 |
| Replicon | chromosome |
| Sequence | Protein sequence (261 a.a.); Nucleotide sequence (783 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPO_RS18990 |
| Coordinate (Strand) | 4016048..4016830 (+) |
| NCBI ID | WP_002213880.1 |
| RefSeq | NC_003143 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpA_N | PF06812.14 | 1.1e-23 | 12..113 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-260 | MSDTPQHIIIKTGTDPRNRPEFNAIREEINKINHPARPEVNWGLIESLALTLFRTHGVDLQTAVYYTLARTQKNGLAGFTEGCELLAGMVVGQWDHLWPEQPQARSEILEWFNTRVSNQLRQHDFTRDDLRLVYRAERALQLLYDKLQQVELKRVPRIENLLYLMQNTAKKLESASDAAKAQQTAAPLKMPPMVYLSVPEAEPVRTAAAAPEPAANIEVRSPPRRLNGGRCCGALVPVSCVVYWWRLRFTLPSSNRCNSK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9949 | - | - |
Protein sequence: 261 a.a.
>T6CP008416 NC_003143:4016048-4016830 [Yersinia pestis CO92] [TssA]
MSDTPQHIIIKTGTDPRNRPEFNAIREEINKINHPARPEVNWGLIESLALTLFRTHGVDLQTAVYYTLARTQKNGLAGFT
EGCELLAGMVVGQWDHLWPEQPQARSEILEWFNTRVSNQLRQHDFTRDDLRLVYRAERALQLLYDKLQQVELKRVPRIEN
LLYLMQNTAKKLESASDAAKAQQTAAPLKMPPMVYLSVPEAEPVRTAAAAPEPAANIEVRSPPRRLNGGRCCGALVPVSC
VVYWWRLRFTLPSSNRCNSK*
MSDTPQHIIIKTGTDPRNRPEFNAIREEINKINHPARPEVNWGLIESLALTLFRTHGVDLQTAVYYTLARTQKNGLAGFT
EGCELLAGMVVGQWDHLWPEQPQARSEILEWFNTRVSNQLRQHDFTRDDLRLVYRAERALQLLYDKLQQVELKRVPRIEN
LLYLMQNTAKKLESASDAAKAQQTAAPLKMPPMVYLSVPEAEPVRTAAAAPEPAANIEVRSPPRRLNGGRCCGALVPVSC
VVYWWRLRFTLPSSNRCNSK*
Nucleotide sequence: 783 bp
>T6CP008416 NC_003143:4016048-4016830 [Yersinia pestis CO92] [TssA]
ATGAGTGACACCCCGCAACATATCATCATTAAAACCGGCACTGACCCACGGAACCGGCCGGAATTTAACGCCATTCGTGA
AGAGATCAACAAAATCAACCACCCGGCACGGCCAGAGGTCAACTGGGGTTTGATTGAATCACTGGCGCTGACCCTGTTCC
GCACCCACGGCGTGGATTTGCAGACGGCGGTGTATTACACGCTGGCCCGCACCCAAAAAAATGGCCTGGCCGGTTTCACC
GAGGGCTGCGAGTTGCTGGCCGGTATGGTAGTCGGCCAGTGGGATCACCTGTGGCCGGAACAGCCGCAGGCACGCAGTGA
AATACTGGAATGGTTCAATACCCGCGTCAGCAATCAACTGCGTCAGCATGATTTTACCCGTGACGATCTGCGGCTGGTGT
ACCGCGCCGAGCGGGCCTTGCAGTTGCTGTACGATAAATTGCAACAGGTTGAATTAAAACGGGTACCGCGCATTGAAAAC
TTGCTGTACCTGATGCAGAACACCGCCAAAAAACTCGAATCGGCCAGTGATGCGGCGAAGGCTCAGCAAACCGCGGCCCC
GCTGAAAATGCCGCCTATGGTCTATCTCTCGGTACCCGAGGCCGAGCCTGTCCGGACGGCAGCGGCAGCCCCTGAGCCTG
CGGCCAATATTGAGGTGCGTTCGCCCCCCCGGCGACTAAACGGGGGGCGGTGCTGTGGGGCTTTGGTGCCGGTGTCCTGT
GTAGTTTACTGGTGGCGACTGCGGTTTACGTTACCCAGTTCAAACCGCTGCAACAGCAAATGA
ATGAGTGACACCCCGCAACATATCATCATTAAAACCGGCACTGACCCACGGAACCGGCCGGAATTTAACGCCATTCGTGA
AGAGATCAACAAAATCAACCACCCGGCACGGCCAGAGGTCAACTGGGGTTTGATTGAATCACTGGCGCTGACCCTGTTCC
GCACCCACGGCGTGGATTTGCAGACGGCGGTGTATTACACGCTGGCCCGCACCCAAAAAAATGGCCTGGCCGGTTTCACC
GAGGGCTGCGAGTTGCTGGCCGGTATGGTAGTCGGCCAGTGGGATCACCTGTGGCCGGAACAGCCGCAGGCACGCAGTGA
AATACTGGAATGGTTCAATACCCGCGTCAGCAATCAACTGCGTCAGCATGATTTTACCCGTGACGATCTGCGGCTGGTGT
ACCGCGCCGAGCGGGCCTTGCAGTTGCTGTACGATAAATTGCAACAGGTTGAATTAAAACGGGTACCGCGCATTGAAAAC
TTGCTGTACCTGATGCAGAACACCGCCAAAAAACTCGAATCGGCCAGTGATGCGGCGAAGGCTCAGCAAACCGCGGCCCC
GCTGAAAATGCCGCCTATGGTCTATCTCTCGGTACCCGAGGCCGAGCCTGTCCGGACGGCAGCGGCAGCCCCTGAGCCTG
CGGCCAATATTGAGGTGCGTTCGCCCCCCCGGCGACTAAACGGGGGGCGGTGCTGTGGGGCTTTGGTGCCGGTGTCCTGT
GTAGTTTACTGGTGGCGACTGCGGTTTACGTTACCCAGTTCAAACCGCTGCAACAGCAAATGA