Detailed information of component protein


Summary

Component ID T6CP008406
Component protein type TssM
T6SS ID (Type) T6SS00047 experimental (Type i1)
Strain Helicobacter hepaticus ATCC 51449
Replicon chromosome
Sequence Protein sequence (1185 a.a.); Nucleotide sequence (3555 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 243237..246791 (+)
NCBI ID WP_011115096.1
RefSeq NC_004917
Uniprot ID Q7VJJ1_HELHP
KEGG ID hhe:HH_0252
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MFGKIFNYLKSK
Transmembrane helix 13-35 TFLYILLICFALLLSVLFYIYSP
Outside 36-49 LFAFNDIYIFSSAL
Transmembrane helix 50-72 TRIQVLIVVWLLIFFIFLYRPLI
Inside 73-453 HLIQSLKNEKHIQYKEIKQEVTKAFRRAKRNYFIALNDAKSMWKRKLYLKNIPLVIIIGNEGAGKSSFINYANIQYPLSESLTSYKKFHKSTNNFNLYISQKGALLDTEGNYFAQENFRQTSNTDEIAEDNLEKNKDFLIKKGVWNQFLHFLNTNTFHSKLNGIVLIIDVHAFLQNPKQYEQNVLQYLSKRVSDCEENLGLQLPIYIVFNKIDLLEGMRTYWDIFDESIANKMLGLTLDKNSSKLELQNTFTELSNSLLYTFMRRNQSLHSLEDKNLALLFLKQLDVLFALAIDFILQAKEQNAFKNKSYIRGVYFTSAYQENVPRNYLLDAVCEKYEIKKPPAKSATKQNKRSYFVQGLLEHIFLKDAHLSSMIKTSWQT
Transmembrane helix 454-476 FKLAFGTISICIFGYVFCTYLIH
Outside 477-1184 KTYKEVDKSHITFNSITSLLANTSSYEHLTLQEKTELMLHLKAILKNYPSLFEKPSIIQYFSLNFSYQGFLPARDFYYAINEEVIGKTLLREMEQILLHNTDQTTLIETIYMYQSLYDEAYINKPLLANWVIKNWQPFAKYKIPKDDFITAIEDLAIGNLSHTQPKDTQALHIAKTQIMQLEQQQRIYTIMAFRNSLKKQSFFNLKDKVGTAFYMIFEHTDKLSQIDKTYTKDGLMEFLSNLDTNIQTAIKIESWAYNEKMQYQALTEQAQRDLYTHIISIYLNDYKQRWEELLQAISPKQYTDKNNILTQLQILSESTNPLNSLIKIVNDNTHLNDTLLLNYAYGLGLPSSDIKAQFTYISNSFKDYYDFIGEKSLLLSQIDSFNDIKKQSSTEEIKEILAKDIQNMSGKITEFTKDDTKNIKDKLIYILEGSNDETDAFVELKRNTAMLPHALKQYYNEISTLSWNVIEKSTYALLNNAWKKEVYDTFINDISPFYPFNAYSDKSLPLNTFKDFFGNTGTLQSFYTQYLSKILQKKGNTYVPNPAYSETIKLSAQFISFFNQISNLNSIFDNNNNLTLNFFIQCLGLSSDFSSLDISYNNQTLHYDHTLNPKIQIIIEQFNSSTELRLSVNDYYQMPQYNKIYSGEWAWLRFIKDITPAQNTGNTLYFENNKQWYFDFSITPNRLELLHLSRILTHFNMPQLITQQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9458 - -


  Protein sequence: 1185 a.a.    


  Nucleotide sequence: 3555 bp