Detailed information of component protein


Summary

Component ID T6CP008393
Component protein type TssD
T6SS ID (Type) T6SS00037 experimental (Type i2)
Strain Escherichia coli CFT073
Replicon chromosome
Sequence Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) C_RS16090
Coordinate (Strand) 3228862..3229353 (+)
NCBI ID WP_000997068.1
RefSeq NC_004431
Uniprot ID S1PDE0_ECOLX, A0A0H2VCJ7_ECOL6, A0A454A793_ECOL5, E2QQR5_ECOLX, F4T4F7_ECOLX, A0A0H3EKQ8_ECO8N, A0A192CAI3_ECOLX, W8ZM09_ECOLX
KEGG ID ecc:c3391, eln:NRG857_13810, ecp:ECP_2805, ecos:EC958_5036
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.2e-38 6..146

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-163 MAIPAYLWLKDDGGADIKGSVDVQGREGSIEVVALDHDVYIPTDNNTGKLTGTRTHKPFTFTKEIDASSPYLYKAVTTGQTLKTAEFKFYRINDAGQEVEYFNITLDNVKLVRVAPLMHDIKDPSREKHNHLERIEFRYEKITWTYKDGNIIHSDSWNERPSA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9853 - -



  Protein sequence: 164 a.a.    

>T6CP008393 NC_004431:3228862-3229353 [Escherichia coli CFT073] [TssD]
MAIPAYLWLKDDGGADIKGSVDVQGREGSIEVVALDHDVYIPTDNNTGKLTGTRTHKPFTFTKEIDASSPYLYKAVTTGQ
TLKTAEFKFYRINDAGQEVEYFNITLDNVKLVRVAPLMHDIKDPSREKHNHLERIEFRYEKITWTYKDGNIIHSDSWNER
PSA*

  Nucleotide sequence: 492 bp    

>T6CP008393 NC_004431:3228862-3229353 [Escherichia coli CFT073] [TssD]
ATGGCTATTCCTGCTTATCTCTGGCTGAAAGATGACGGCGGCGCGGATATCAAAGGTTCCGTGGACGTTCAGGGGCGCGA
AGGTAGCATCGAAGTGGTGGCGCTGGATCACGATGTGTACATCCCGACCGACAATAACACCGGCAAACTGACCGGTACCC
GTACTCACAAGCCTTTTACGTTTACCAAAGAAATCGATGCGTCCAGCCCGTATCTCTACAAAGCTGTGACCACCGGACAG
ACCCTGAAAACGGCAGAATTTAAGTTTTACCGCATCAACGATGCCGGTCAGGAAGTGGAGTACTTCAACATCACGCTTGA
TAACGTCAAGCTGGTCAGAGTCGCTCCGCTTATGCACGACATCAAGGATCCTTCCAGAGAGAAGCATAACCACCTGGAAC
GTATTGAGTTCCGCTACGAGAAAATCACCTGGACTTACAAAGACGGCAACATCATTCATTCCGACTCGTGGAATGAGCGT
CCTTCCGCCTGA