Detailed information of component protein

Summary

Component ID	T6CP008385
Component protein type	TssD
T6SS ID (Type)	T6SS00006 (Type i1)
Strain	Escherichia coli O157:H7 str. EDL933
Replicon	chromosome
Sequence	Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

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External database links

Locus tag (Gene)	Z_RS01230
Coordinate (Strand)	264134..264652 (+)
NCBI ID	WP_001142958.1
RefSeq	NC_002655
Uniprot ID	A0A1Z3UUT6_ECOLX, A0A0E0Y4V8_ECO1C, L3QI00_ECOLX, A0A222QFD4_ECOLX, U9YRG6_ECOLX, V0YIY8_ECOLX, A0A7U9J1J4_ECOLX, W1EQY6_ECOLX, A0A3D8XNL5_9ENTR, A0A6I4KHM9_9ENTR, A0A6H2GIT7_9ESCH, A0A7W4PWZ7_9ESCH, A7ZHX3_ECO24, A0A7M3S2F6_ECOHS, A0A0E1SSY5_ECOLX, B6HZU9_ECOSE, A0A0H3PHB8_ECO5C, D6I5D3_ECOLX, O52671_ECOLX, A0A7L6ZRT9_ESCFE, E0J653_ECOLW, A0A170UYG5_KLEOX, B7LHE1_ECO55, A0A7Z1J2J2_SHIFL, A0A7Z1D0C6_SHISO, A0A1X3JLW6_ECOLX, A0A1X3L786_ECOLX, F4VA08_ECOLX, A0A1X3IBM1_ECOLX, F4TA69_ECOLX, A0A1X3LM59_ECOLX, A0A1X3J5C3_ECOLX, E9XQ91_ECOLX, E6BQG9_ECOLX, E1IYR3_ECOLX, E1JBS7_ECOLX, D8E9U8_ECOLX, D3QWN1_ECOCB, D7XRD3_ECOLX, E9TA15_ECOLX, Q7DC35_ECO57, I2UQJ1_ECOLX, I2WRX5_ECOLX, F0JUI5_ESCFE
KEGG ID	ecw:EcE24377A_0243, elw:ECW_m0233, eck:EC55989_0235, ecs:ECs0234, ecx:EcHS_A0241, esl:O3K_20405, ecy:ECSE_0232, eok:G2583_0242
PDB ID	-

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Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	5e-32	8..155

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Transmembrane helices

• Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

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Signal peptides

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

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  Protein sequence: 173 a.a.    Download


  Nucleotide sequence: 519 bp    Download