Detailed information of component protein


Summary

Component ID T6CP008367
Component protein type TssF
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (614 a.a.); Nucleotide sequence (1842 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11915
Coordinate (Strand) 2636129..2637970 (+)
NCBI ID WP_015872011.1
RefSeq NC_012779
Uniprot ID C5B8Q0_EDWI9
KEGG ID eic:NT01EI_2742
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2e-214 2..609
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-613 MAELLPYYNRELAFLRQLGREFASQYPKVAGRLLLEEGVSEDPHVERLIEAVAFLCARVHHKIDEQFPEITNALLGILYPHYLRPIPSISLVQFSVDPAQTNLSGPLRLPRHTSLLSRQVDGMACRFRTTYPVEIWPVSVIHACFSPARQTSLSVQQQGSAGLICIQLQAHPGHHLNTLGMDRLRFFLQGEPAVVHTLYELLFNNVTKVVLRSGAEEWTLPASIISPVGFDEDENLFDYDARSSQAYRLLHEYFVFPDKFLFFDMTGLLQATPLPEACQEIDLLIHLSEFEREGRLTKLTDTIDASTFRLGCSPVVNLFRQRAEPLQITHRKTEYQIIPDIRRPWGMEVYSVDAVSKQVKNDGQEKTKLYRPLFGLHHANDSEPQRVFWMENRRGGIRGDDPGKDVYLSLVDLDFDPNQSSSETLSIDVTCTNREFPSLLPFGGDQGDFEVDGGSLVTRIHCLRKPTSTLRPAHGRAAMWRLISHLNLNLLSITGENEEATEAFRELLGLYNFSDSPALRQQIAGIVSINSQPATARLCSRNQAAVVRGIEITLVLDESQFEGAGVYLFSAVVERFVSQYSAINSFTRLHVRTQQREQALKRWPPRAGKAVLS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9973 - -


  Protein sequence: 614 a.a.    

>T6CP008367 NC_012779:2636129-2637970 [Edwardsiella ictaluri 93-146] [TssF]
MAELLPYYNRELAFLRQLGREFASQYPKVAGRLLLEEGVSEDPHVERLIEAVAFLCARVHHKIDEQFPEITNALLGILYP
HYLRPIPSISLVQFSVDPAQTNLSGPLRLPRHTSLLSRQVDGMACRFRTTYPVEIWPVSVIHACFSPARQTSLSVQQQGS
AGLICIQLQAHPGHHLNTLGMDRLRFFLQGEPAVVHTLYELLFNNVTKVVLRSGAEEWTLPASIISPVGFDEDENLFDYD
ARSSQAYRLLHEYFVFPDKFLFFDMTGLLQATPLPEACQEIDLLIHLSEFEREGRLTKLTDTIDASTFRLGCSPVVNLFR
QRAEPLQITHRKTEYQIIPDIRRPWGMEVYSVDAVSKQVKNDGQEKTKLYRPLFGLHHANDSEPQRVFWMENRRGGIRGD
DPGKDVYLSLVDLDFDPNQSSSETLSIDVTCTNREFPSLLPFGGDQGDFEVDGGSLVTRIHCLRKPTSTLRPAHGRAAMW
RLISHLNLNLLSITGENEEATEAFRELLGLYNFSDSPALRQQIAGIVSINSQPATARLCSRNQAAVVRGIEITLVLDESQ
FEGAGVYLFSAVVERFVSQYSAINSFTRLHVRTQQREQALKRWPPRAGKAVLS*

  Nucleotide sequence: 1842 bp    

>T6CP008367 NC_012779:2636129-2637970 [Edwardsiella ictaluri 93-146] [TssF]
ATGGCCGAGTTATTGCCCTACTATAACCGGGAACTGGCGTTCCTCCGCCAGTTGGGACGTGAGTTCGCCTCCCAGTATCC
CAAGGTAGCCGGCCGCCTTCTGCTGGAGGAGGGAGTATCGGAAGATCCTCATGTCGAGCGGCTGATCGAAGCCGTGGCAT
TTCTCTGCGCCCGCGTGCATCACAAGATAGATGAGCAGTTCCCCGAAATAACCAATGCGTTGCTGGGGATCCTCTATCCC
CATTACCTGCGCCCGATTCCCTCCATATCTCTGGTCCAGTTTTCGGTCGATCCGGCACAGACCAACTTGTCAGGCCCGCT
GCGGCTGCCACGACATACCAGCCTGCTATCCCGCCAGGTGGATGGCATGGCATGCCGGTTCCGGACCACCTACCCGGTGG
AAATTTGGCCGGTGTCAGTCATCCATGCCTGCTTCTCCCCCGCGCGACAAACCAGCCTGTCAGTACAACAGCAGGGAAGC
GCCGGTCTGATCTGTATTCAGCTGCAAGCCCATCCGGGACATCATCTGAATACCCTGGGAATGGATAGACTGCGTTTCTT
TCTTCAGGGTGAGCCTGCCGTGGTGCACACCCTGTATGAGCTGCTGTTCAACAATGTGACCAAGGTGGTCCTGCGCTCCG
GGGCGGAGGAGTGGACCCTGCCTGCCAGCATCATCTCACCGGTTGGATTCGACGAGGATGAGAACCTGTTTGACTACGAT
GCCCGCTCGTCCCAGGCCTACCGCCTACTGCACGAATACTTTGTTTTTCCTGACAAGTTCCTGTTTTTTGATATGACCGG
GTTGCTGCAGGCAACTCCGCTGCCTGAGGCCTGCCAGGAGATCGATCTGTTGATCCATCTGTCAGAGTTCGAACGGGAGG
GACGCCTGACCAAACTGACCGATACTATCGATGCCTCAACGTTCCGGCTGGGATGCAGCCCGGTGGTCAACCTGTTCCGG
CAGCGGGCAGAGCCTTTGCAGATAACCCACCGTAAAACCGAGTACCAAATTATTCCCGATATACGCCGTCCCTGGGGCAT
GGAGGTCTATTCGGTCGATGCCGTCAGTAAACAGGTCAAGAATGATGGGCAAGAGAAGACGAAGCTCTACCGTCCCCTGT
TCGGCCTGCATCACGCCAACGACAGTGAGCCACAGCGGGTATTCTGGATGGAAAATCGCCGTGGCGGGATCCGCGGGGAT
GACCCGGGCAAGGACGTCTATTTATCCCTGGTGGATTTGGATTTTGACCCCAATCAGTCATCATCGGAAACCCTGAGCAT
CGATGTGACCTGCACTAACCGAGAATTTCCCTCCCTGCTGCCCTTCGGCGGTGACCAAGGGGACTTCGAGGTAGACGGAG
GCTCTCTCGTCACCCGGATCCACTGCCTGCGCAAGCCGACATCGACCCTGCGCCCTGCCCACGGCAGGGCAGCCATGTGG
CGGCTGATCTCCCACCTGAACCTGAACCTGCTCTCCATCACCGGTGAAAACGAGGAGGCAACCGAGGCATTCAGGGAGCT
GCTCGGACTGTATAACTTCAGCGACTCCCCCGCCCTGCGTCAGCAGATTGCCGGCATTGTCAGTATCAACAGCCAGCCGG
CGACGGCGCGCCTGTGCAGCCGGAATCAGGCGGCGGTGGTTCGGGGCATCGAAATTACACTGGTGCTGGATGAGAGCCAA
TTTGAGGGAGCCGGGGTGTATCTGTTCAGTGCCGTGGTAGAGCGATTCGTCAGCCAGTATAGCGCCATCAACAGTTTTAC
CCGCCTGCATGTACGCACCCAGCAGCGGGAACAAGCGCTCAAGCGCTGGCCGCCGCGGGCGGGTAAGGCGGTGCTGTCAT
GA