Detailed information of component protein
Summary
| Component ID | T6CP008366 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00346  (Type i4b) |
| Strain | Edwardsiella ictaluri 93-146 |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | NT01EI_RS11910 |
| Coordinate (Strand) | 2635649..2636125 (+) |
| NCBI ID | WP_015872010.1 |
| RefSeq | NC_012779 |
| Uniprot ID | C5B8P9_EDWI9, O52404_EDWIC |
| KEGG ID | eic:NT01EI_2741 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 6.8e-19 | 38..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MILHRIFRPSVLDRLFDDFPQEGTERTSDRRYELAHFRWTVRRDVEDILNSRSALALDISQWPELEKSPLNYGLPDCSNLSAANAEDREWIRQHIERVIDLFEPRLRQVRVQIHLDEKTGISQMIFRIEALLDVEPSPEPVVFDAVLDVSTQLYRIDR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9954 | - | - |
Protein sequence: 159 a.a.
>T6CP008366 NC_012779:2635649-2636125 [Edwardsiella ictaluri 93-146] [TssE]
MILHRIFRPSVLDRLFDDFPQEGTERTSDRRYELAHFRWTVRRDVEDILNSRSALALDISQWPELEKSPLNYGLPDCSNL
SAANAEDREWIRQHIERVIDLFEPRLRQVRVQIHLDEKTGISQMIFRIEALLDVEPSPEPVVFDAVLDVSTQLYRIDR*
MILHRIFRPSVLDRLFDDFPQEGTERTSDRRYELAHFRWTVRRDVEDILNSRSALALDISQWPELEKSPLNYGLPDCSNL
SAANAEDREWIRQHIERVIDLFEPRLRQVRVQIHLDEKTGISQMIFRIEALLDVEPSPEPVVFDAVLDVSTQLYRIDR*
Nucleotide sequence: 477 bp
>T6CP008366 NC_012779:2635649-2636125 [Edwardsiella ictaluri 93-146] [TssE]
ATGATCCTTCATCGTATCTTCCGCCCTTCCGTGCTGGATCGTTTGTTCGATGATTTCCCGCAGGAGGGAACAGAACGGAC
ATCAGATCGCCGGTATGAACTGGCCCATTTTCGCTGGACCGTCAGACGGGATGTGGAAGATATTCTGAATTCGCGATCCG
CGCTGGCACTGGATATAAGCCAGTGGCCTGAGCTGGAAAAATCCCCCCTGAATTACGGCCTGCCGGACTGCTCAAACCTG
AGTGCCGCCAATGCCGAGGATCGGGAGTGGATCCGCCAGCATATCGAACGAGTGATTGACCTGTTTGAACCCCGGCTACG
TCAGGTCCGGGTTCAAATCCATCTGGATGAGAAAACCGGCATCAGCCAGATGATATTCAGGATCGAGGCATTACTGGACG
TGGAGCCCTCTCCAGAGCCGGTGGTATTTGATGCCGTTCTGGATGTTTCAACACAGCTGTACCGAATAGACAGGTGA
ATGATCCTTCATCGTATCTTCCGCCCTTCCGTGCTGGATCGTTTGTTCGATGATTTCCCGCAGGAGGGAACAGAACGGAC
ATCAGATCGCCGGTATGAACTGGCCCATTTTCGCTGGACCGTCAGACGGGATGTGGAAGATATTCTGAATTCGCGATCCG
CGCTGGCACTGGATATAAGCCAGTGGCCTGAGCTGGAAAAATCCCCCCTGAATTACGGCCTGCCGGACTGCTCAAACCTG
AGTGCCGCCAATGCCGAGGATCGGGAGTGGATCCGCCAGCATATCGAACGAGTGATTGACCTGTTTGAACCCCGGCTACG
TCAGGTCCGGGTTCAAATCCATCTGGATGAGAAAACCGGCATCAGCCAGATGATATTCAGGATCGAGGCATTACTGGACG
TGGAGCCCTCTCCAGAGCCGGTGGTATTTGATGCCGTTCTGGATGTTTCAACACAGCTGTACCGAATAGACAGGTGA