Detailed information of component protein


Summary

Component ID T6CP008366
Component protein type TssE
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (159 a.a.); Nucleotide sequence (477 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11910
Coordinate (Strand) 2635649..2636125 (+)
NCBI ID WP_015872010.1
RefSeq NC_012779
Uniprot ID C5B8P9_EDWI9, O52404_EDWIC
KEGG ID eic:NT01EI_2741
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
GPW_gp25PF04965.166.8e-1938..136
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-158MILHRIFRPSVLDRLFDDFPQEGTERTSDRRYELAHFRWTVRRDVEDILNSRSALALDISQWPELEKSPLNYGLPDCSNLSAANAEDREWIRQHIERVIDLFEPRLRQVRVQIHLDEKTGISQMIFRIEALLDVEPSPEPVVFDAVLDVSTQLYRIDR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9954--


  Protein sequence: 159 a.a.    

>T6CP008366 NC_012779:2635649-2636125 [Edwardsiella ictaluri 93-146] [TssE]
MILHRIFRPSVLDRLFDDFPQEGTERTSDRRYELAHFRWTVRRDVEDILNSRSALALDISQWPELEKSPLNYGLPDCSNL
SAANAEDREWIRQHIERVIDLFEPRLRQVRVQIHLDEKTGISQMIFRIEALLDVEPSPEPVVFDAVLDVSTQLYRIDR*

  Nucleotide sequence: 477 bp    

>T6CP008366 NC_012779:2635649-2636125 [Edwardsiella ictaluri 93-146] [TssE]
ATGATCCTTCATCGTATCTTCCGCCCTTCCGTGCTGGATCGTTTGTTCGATGATTTCCCGCAGGAGGGAACAGAACGGAC
ATCAGATCGCCGGTATGAACTGGCCCATTTTCGCTGGACCGTCAGACGGGATGTGGAAGATATTCTGAATTCGCGATCCG
CGCTGGCACTGGATATAAGCCAGTGGCCTGAGCTGGAAAAATCCCCCCTGAATTACGGCCTGCCGGACTGCTCAAACCTG
AGTGCCGCCAATGCCGAGGATCGGGAGTGGATCCGCCAGCATATCGAACGAGTGATTGACCTGTTTGAACCCCGGCTACG
TCAGGTCCGGGTTCAAATCCATCTGGATGAGAAAACCGGCATCAGCCAGATGATATTCAGGATCGAGGCATTACTGGACG
TGGAGCCCTCTCCAGAGCCGGTGGTATTTGATGCCGTTCTGGATGTTTCAACACAGCTGTACCGAATAGACAGGTGA