Detailed information of component protein


Summary

Component ID T6CP008365
Component protein type TssC
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (496 a.a.); Nucleotide sequence (1488 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11895
Coordinate (Strand) 2632251..2633738 (+)
NCBI ID WP_015872007.1
RefSeq NC_012779
Uniprot ID C5B8P6_EDWI9, O52406_EDWIC
KEGG ID eic:NT01EI_2738
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.7e-138 69..369
VipB_2 PF18945.2 7.3e-45 379..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-495 MSEQNLPESAAVESAAPEDSLLDSIIAETRMARSDLERERARDLLGEWVSEVLSGTVTVSGDVLASIEARIAQIDALLSAQLSTIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLNVSRKDLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAAMIGDYEFSNHPEDLFLLEEISHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIALALPHVLGRLPYGAATVPVEAFNFEEDVNGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAAIRGVEGGGLVEGLPAHTFTTDDGEVELKCPTEVAITDRREKELADLGFIALTHCKGTDYAAFFSTQSAQKPKEYDSDSANANARIACQLQYIMATSRFAHYLKSMVRDKLGSFMSRSECEYFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLTASLRLVADLPPPAQG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9664 - -


  Protein sequence: 496 a.a.    

>T6CP008365 NC_012779:2632251-2633738 [Edwardsiella ictaluri 93-146] [TssC]
MSEQNLPESAAVESAAPEDSLLDSIIAETRMARSDLERERARDLLGEWVSEVLSGTVTVSGDVLASIEARIAQIDALLSA
QLSTIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLNVSRKDLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAA
MIGDYEFSNHPEDLFLLEEISHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIAL
ALPHVLGRLPYGAATVPVEAFNFEEDVNGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAAIRGVEGGGLVEGLPAHTFTT
DDGEVELKCPTEVAITDRREKELADLGFIALTHCKGTDYAAFFSTQSAQKPKEYDSDSANANARIACQLQYIMATSRFAH
YLKSMVRDKLGSFMSRSECEYFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLT
ASLRLVADLPPPAQG*

  Nucleotide sequence: 1488 bp    

>T6CP008365 NC_012779:2632251-2633738 [Edwardsiella ictaluri 93-146] [TssC]
ATGAGCGAACAGAACTTGCCAGAAAGTGCCGCTGTCGAGAGCGCGGCTCCAGAGGACAGCCTGCTGGATAGCATCATTGC
TGAAACCCGGATGGCACGCAGTGACCTGGAGAGAGAGCGGGCGCGGGACCTGTTGGGGGAATGGGTAAGTGAGGTTCTGT
CGGGAACGGTGACAGTTTCCGGTGACGTACTGGCCAGTATTGAGGCACGTATTGCCCAGATCGATGCGCTGCTCTCCGCC
CAGCTGTCCACCATTATGCATGAGCCGGCTTTCCAAAAGCTGGAAGGGTCATGGCGTGGACTGCATTACCTGGTACATCA
AAGCGAAACCGGTACCGGCCTGAAAATCCGCATGCTGAATGTCAGCCGAAAAGATCTGATCCGCGACTTTAAGAGTGCCG
CCGAGTTTGATCAGAGCGCCCTGTTCAAGAAAGTCTATGAGGAGGAGTACGGCACCTTTGGTGGTGCCCCCTTTGCAGCC
ATGATCGGGGATTATGAGTTCAGCAACCACCCGGAGGATCTGTTTCTGCTGGAGGAGATCTCACACGTTGCGGCGGCAGC
CCATGCTCCCTTCCTCTCTGCCGCCAGCGCAGGAATGTTCGGACTGGATAGCCTGACAGAGCTGTCGATCCCCAGGGATC
TGGCCAAAGGCTTTGATACGGTTGAGTATGCCAAGTGGAAATCGCTGCGCCAGTCGGAGGATGCCCGCTATATCGCCCTG
GCCCTGCCCCACGTGCTTGGCCGACTGCCTTACGGTGCCGCGACGGTACCGGTAGAGGCATTCAATTTTGAGGAAGATGT
CAACGGCAAGGAGCATGGCAAATATCTGTGGCTGAATGCGGCCTATGCGCTGGGTACCCGCCTGACTCAGGCCTATGCCA
AATATGGCTGGTGCGCCGCCATCCGGGGAGTCGAAGGAGGTGGTCTGGTGGAGGGACTGCCGGCGCACACCTTTACTACC
GATGATGGCGAAGTAGAGCTCAAGTGTCCCACCGAAGTGGCCATTACCGATCGCCGGGAGAAAGAGTTGGCCGACCTGGG
ATTTATCGCCCTGACCCACTGTAAGGGTACCGACTATGCCGCATTCTTTTCGACCCAGTCGGCACAAAAGCCCAAGGAAT
ATGACAGTGACTCAGCTAATGCCAACGCCAGGATCGCCTGCCAGCTGCAATATATTATGGCCACCTCGCGCTTTGCCCAT
TATTTAAAATCGATGGTCCGCGACAAGCTCGGCAGCTTTATGAGCCGTAGCGAATGTGAATACTTTCTCAATCAGTGGAT
CAGTAATTATGTGGTCGGTTCAGATGATGCAGGCCAGGATATTAAGGCGAAATACCCATTACGGGAAGCCCGTATTGATG
TCAGCGATATTCCAGGTAAACCGGGGTTCTATAAGGCAGTGGCCTATTTAAAACCCCATTTCCAGCTGGAGGGGCTGACC
GCATCTTTACGTTTGGTCGCCGATCTGCCGCCACCGGCGCAAGGCTAA