Detailed information of component protein


Summary

Component ID T6CP008364
Component protein type TssB
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (171 a.a.); Nucleotide sequence (513 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11890
Coordinate (Strand) 2631739..2632251 (+)
NCBI ID WP_015872006.1
RefSeq NC_012779
Uniprot ID C5B8P5_EDWI9, O52407_EDWIC
KEGG ID eic:NT01EI_2737
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
T6SS_VipAPF05591.144.7e-6011..163
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-170MASESKQHTLDRVRSPRVQITYDVEIGDAQEMKELPFVMGVLGDYSGQPATPLPKLKERKFVSIDRDNFNDVIKGIHPHLSFRTENTLAGDDSQLSVELHFQSMADFTPERIAAQVEPLRKLMNIRSRLSDLKNKMYSNERLGEVLQGIIEDTEKLQNLGKETGFSEEQQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9963--


  Protein sequence: 171 a.a.    

>T6CP008364 NC_012779:2631739-2632251 [Edwardsiella ictaluri 93-146] [TssB]
MASESKQHTLDRVRSPRVQITYDVEIGDAQEMKELPFVMGVLGDYSGQPATPLPKLKERKFVSIDRDNFNDVIKGIHPHL
SFRTENTLAGDDSQLSVELHFQSMADFTPERIAAQVEPLRKLMNIRSRLSDLKNKMYSNERLGEVLQGIIEDTEKLQNLG
KETGFSEEQQ*

  Nucleotide sequence: 513 bp    

>T6CP008364 NC_012779:2631739-2632251 [Edwardsiella ictaluri 93-146] [TssB]
ATGGCAAGTGAAAGCAAGCAGCATACTTTGGATCGGGTCCGCTCGCCAAGAGTGCAGATTACCTATGATGTTGAAATTGG
CGATGCGCAGGAGATGAAGGAGCTGCCATTTGTCATGGGGGTTCTCGGTGACTATTCAGGGCAACCGGCGACCCCGCTTC
CCAAGCTGAAAGAACGCAAATTCGTTTCGATTGATCGTGACAACTTCAACGATGTTATCAAAGGGATACATCCACATCTG
TCATTCCGCACTGAAAATACCCTGGCAGGAGATGACAGCCAGCTGTCGGTGGAGCTGCATTTTCAAAGTATGGCGGATTT
CACTCCTGAGCGAATAGCGGCACAGGTCGAACCACTACGCAAGCTGATGAATATCCGCAGCCGACTCTCCGATCTGAAAA
ACAAGATGTACAGCAACGAGCGCCTGGGTGAGGTATTGCAGGGCATCATTGAAGATACCGAAAAACTGCAAAATCTGGGT
AAAGAGACCGGTTTTAGTGAGGAACAGCAATAA