Detailed information of component protein
Summary
| Component ID | T6CP008364 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00346  (Type i4b) |
| Strain | Edwardsiella ictaluri 93-146 |
| Replicon | chromosome |
| Sequence | Protein sequence (171 a.a.); Nucleotide sequence (513 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | NT01EI_RS11890 |
| Coordinate (Strand) | 2631739..2632251 (+) |
| NCBI ID | WP_015872006.1 |
| RefSeq | NC_012779 |
| Uniprot ID | C5B8P5_EDWI9, O52407_EDWIC |
| KEGG ID | eic:NT01EI_2737 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 4.7e-60 | 11..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-170 | MASESKQHTLDRVRSPRVQITYDVEIGDAQEMKELPFVMGVLGDYSGQPATPLPKLKERKFVSIDRDNFNDVIKGIHPHLSFRTENTLAGDDSQLSVELHFQSMADFTPERIAAQVEPLRKLMNIRSRLSDLKNKMYSNERLGEVLQGIIEDTEKLQNLGKETGFSEEQQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9963 | - | - |
Protein sequence: 171 a.a.
>T6CP008364 NC_012779:2631739-2632251 [Edwardsiella ictaluri 93-146] [TssB]
MASESKQHTLDRVRSPRVQITYDVEIGDAQEMKELPFVMGVLGDYSGQPATPLPKLKERKFVSIDRDNFNDVIKGIHPHL
SFRTENTLAGDDSQLSVELHFQSMADFTPERIAAQVEPLRKLMNIRSRLSDLKNKMYSNERLGEVLQGIIEDTEKLQNLG
KETGFSEEQQ*
MASESKQHTLDRVRSPRVQITYDVEIGDAQEMKELPFVMGVLGDYSGQPATPLPKLKERKFVSIDRDNFNDVIKGIHPHL
SFRTENTLAGDDSQLSVELHFQSMADFTPERIAAQVEPLRKLMNIRSRLSDLKNKMYSNERLGEVLQGIIEDTEKLQNLG
KETGFSEEQQ*
Nucleotide sequence: 513 bp
>T6CP008364 NC_012779:2631739-2632251 [Edwardsiella ictaluri 93-146] [TssB]
ATGGCAAGTGAAAGCAAGCAGCATACTTTGGATCGGGTCCGCTCGCCAAGAGTGCAGATTACCTATGATGTTGAAATTGG
CGATGCGCAGGAGATGAAGGAGCTGCCATTTGTCATGGGGGTTCTCGGTGACTATTCAGGGCAACCGGCGACCCCGCTTC
CCAAGCTGAAAGAACGCAAATTCGTTTCGATTGATCGTGACAACTTCAACGATGTTATCAAAGGGATACATCCACATCTG
TCATTCCGCACTGAAAATACCCTGGCAGGAGATGACAGCCAGCTGTCGGTGGAGCTGCATTTTCAAAGTATGGCGGATTT
CACTCCTGAGCGAATAGCGGCACAGGTCGAACCACTACGCAAGCTGATGAATATCCGCAGCCGACTCTCCGATCTGAAAA
ACAAGATGTACAGCAACGAGCGCCTGGGTGAGGTATTGCAGGGCATCATTGAAGATACCGAAAAACTGCAAAATCTGGGT
AAAGAGACCGGTTTTAGTGAGGAACAGCAATAA
ATGGCAAGTGAAAGCAAGCAGCATACTTTGGATCGGGTCCGCTCGCCAAGAGTGCAGATTACCTATGATGTTGAAATTGG
CGATGCGCAGGAGATGAAGGAGCTGCCATTTGTCATGGGGGTTCTCGGTGACTATTCAGGGCAACCGGCGACCCCGCTTC
CCAAGCTGAAAGAACGCAAATTCGTTTCGATTGATCGTGACAACTTCAACGATGTTATCAAAGGGATACATCCACATCTG
TCATTCCGCACTGAAAATACCCTGGCAGGAGATGACAGCCAGCTGTCGGTGGAGCTGCATTTTCAAAGTATGGCGGATTT
CACTCCTGAGCGAATAGCGGCACAGGTCGAACCACTACGCAAGCTGATGAATATCCGCAGCCGACTCTCCGATCTGAAAA
ACAAGATGTACAGCAACGAGCGCCTGGGTGAGGTATTGCAGGGCATCATTGAAGATACCGAAAAACTGCAAAATCTGGGT
AAAGAGACCGGTTTTAGTGAGGAACAGCAATAA