Detailed information of component protein


Summary

Component ID T6CP008076
Component protein type TssH
T6SS ID (Type) T6SS00764 experimental (Type i3)
Strain Pseudomonas protegens CHA0
Replicon chromosome
Sequence Protein sequence (892 a.a.); Nucleotide sequence (2676 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PFLCHA0_RS30180
Coordinate (Strand) 6713888..6716563 (+)
NCBI ID WP_015637485.1
RefSeq NC_021237
Uniprot ID A0A2C9EVU5_PSEPH
KEGG ID pprc:PFLCHA0_c60520
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 7.3e-39 620..786
AAA_lid_9 PF17871.3 1.9e-28 373..465
ClpB_D2-small PF10431.11 1.4e-13 793..867
AAA PF00004.31 5.8e-09 234..367
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-891 MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLTDSDLHRIIRQFNLEPARLAKDLTEALDRLPRGSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVIGILKTPSLRHALLGLSREFDKIKVETLCERFDEYIGDSPENALSASDGFSAGAVPGEASGAMAPSALGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRIVVGDVPPALKDVELRSLDVGLLQAGASMKGEFEQRLRQVIEDVQASPKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVAEPSEDKALLMMRGVASTMEQHHQVQILDEALEASVKLSHRYIPARQLPDKSVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREQAIGVAIGNRQVNSENLLTAERERLAELESRWAQEKTLVDELLATRAQLRENVGLVDSDVGDDSHGLREKLVDLQQRLSTLQGETPLILPTVDYQAVASVVADWTGIPVGRMARNELETVLNLDQHLKKRIIGQDHALQMIAKRIQTSRAGLDNPNKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRMIDFKNTLILLTTNAGTELIANVCKNPQAVPEPEEIAKALRQPLLEIFPPALLGRLVTIPYYPLSDEMLKAITRLQLGRIKKRVESTHKVDFDFDDEVIDLIVSRCTETESGGRMIDAILTNSLLPDMSREFLNRMLEGRALAGVRISQRDNELHYDFSEPA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9911 - -


  Protein sequence: 892 a.a.    

>T6CP008076 NC_021237:6713888-6716563 [Pseudomonas protegens CHA0] [TssH]
MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLTDSDLHRIIRQFNLEPARLAKDLTEALDRLPR
GSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVIGILKTPSLRHALLGLSREFDKIKVETLCERFDEYIGDSPEN
ALSASDGFSAGAVPGEASGAMAPSALGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAG
VGKTAVVEGFALRIVVGDVPPALKDVELRSLDVGLLQAGASMKGEFEQRLRQVIEDVQASPKPIILFIDEAHTLVGAGGA
AGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVAEPSEDKALLMMRGVASTMEQHHQVQILDEA
LEASVKLSHRYIPARQLPDKSVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREQAIGVAIGNRQVNSENL
LTAERERLAELESRWAQEKTLVDELLATRAQLRENVGLVDSDVGDDSHGLREKLVDLQQRLSTLQGETPLILPTVDYQAV
ASVVADWTGIPVGRMARNELETVLNLDQHLKKRIIGQDHALQMIAKRIQTSRAGLDNPNKPIGVFMLAGTSGVGKTETAL
ALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDK
GVMEDGEGRMIDFKNTLILLTTNAGTELIANVCKNPQAVPEPEEIAKALRQPLLEIFPPALLGRLVTIPYYPLSDEMLKA
ITRLQLGRIKKRVESTHKVDFDFDDEVIDLIVSRCTETESGGRMIDAILTNSLLPDMSREFLNRMLEGRALAGVRISQRD
NELHYDFSEPA*

  Nucleotide sequence: 2676 bp    

>T6CP008076 NC_021237:6713888-6716563 [Pseudomonas protegens CHA0] [TssH]
ATGGGTGAAATCAGTCGCGCGGCGCTGTTCGGCAAACTCAACAGCGTTGCCTACAAAGCCATCGAAGCCGCCACGGTCTT
CTGCAAATTGCGGGGCAACCCCTATGTGGAACTGGCCCACTGGTTTCACCAGTTGCTGCAACTTACGGACTCGGACCTGC
ACCGCATCATCCGCCAGTTCAACCTGGAGCCGGCGCGCCTGGCCAAGGACCTGACCGAGGCCCTGGACCGCCTGCCCCGG
GGCTCGACCTCGATCACCGACCTGTCGTCCCACGTCGAGGAGGCGGTGGAGCGCGGTTGGGTCTACGGCAGCCTGATGTT
CGGCGAAAGCCAGGTGCGCACCGGCTACCTGGTGATCGGCATCCTCAAGACCCCGAGCCTGCGCCATGCGTTGCTGGGGC
TGTCCCGCGAGTTCGACAAGATCAAGGTCGAGACCCTGTGCGAGCGCTTTGACGAATACATCGGCGACTCGCCGGAAAAC
GCCCTGAGCGCCAGCGACGGCTTCAGTGCCGGTGCGGTGCCCGGCGAAGCCAGCGGCGCCATGGCCCCCAGCGCCCTGGG
CAAGCAGGAAGCCCTCAAGCGCTTCACCGTCGACCTCACCGAACAGGCCCGCAGCGGCAAGCTCGACCCCATTGTCGGCC
GTGACGAAGAGATCCGCCAACTGGTGGACATCCTCATGCGCCGCCGGCAGAACAACCCGATCCTCACCGGTGAAGCCGGG
GTGGGCAAGACCGCGGTGGTGGAAGGTTTCGCCCTGCGCATCGTCGTCGGCGACGTGCCGCCGGCGCTCAAGGACGTTGA
ACTGCGCAGCCTCGACGTCGGCCTGCTGCAGGCCGGCGCCAGCATGAAGGGCGAGTTCGAACAGCGCCTGCGCCAGGTCA
TCGAGGACGTCCAGGCCTCGCCCAAGCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGGTGGGCGCCGGTGGCGCC
GCCGGCACCGGCGACGCGGCCAACCTGCTCAAGCCGGCTCTGGCCCGTGGCACCCTGCGCACCGTGGCCGCCACCACCTG
GGCCGAGTACAAGAAGCACATCGAGAAAGACCCGGCCCTGACCCGGCGCTTCCAGGTGGTGCAAGTAGCCGAACCTTCGG
AAGACAAGGCGCTGCTGATGATGCGCGGCGTGGCCTCGACCATGGAACAGCACCATCAGGTGCAGATCCTCGACGAAGCC
CTGGAGGCCTCGGTCAAACTGTCCCATCGCTACATTCCCGCGCGCCAGTTGCCGGATAAATCCGTCAGCCTGCTGGATAC
CGCTTGCGCCCGCGTCGCCATCAGCCTGCACGCCGTGCCGGCCGAGGTGGACGATAGCCGCCGGCGCATCGAGGCCCTGG
AAACCGAGCTGCAGATCATCGCCCGGGAACAGGCGATCGGCGTTGCCATTGGCAACCGCCAGGTCAACAGCGAGAACCTC
CTGACTGCCGAGCGCGAGCGCCTGGCCGAGCTGGAAAGTCGCTGGGCACAAGAGAAGACCCTGGTGGACGAACTGCTGGC
AACCCGCGCCCAATTGCGGGAAAACGTCGGCCTGGTGGACAGCGACGTCGGCGACGACAGCCACGGCCTGCGGGAAAAAC
TGGTGGACCTGCAACAGCGCCTCAGCACCCTGCAAGGCGAGACCCCGCTGATCCTGCCGACCGTGGACTACCAGGCCGTG
GCCTCGGTGGTCGCCGACTGGACCGGCATTCCAGTGGGGCGCATGGCCCGCAACGAGCTGGAAACCGTGCTCAACCTGGA
CCAGCACCTGAAGAAACGCATCATCGGCCAGGACCACGCCCTGCAGATGATCGCCAAGCGCATCCAGACCTCCCGCGCAG
GCCTCGACAACCCGAACAAGCCGATTGGCGTGTTCATGCTGGCCGGCACTTCCGGGGTGGGCAAGACCGAAACCGCCCTG
GCCCTGGCCGAAGCCATGTATGGCGGTGAGCAGAACGTCATCACCATCAACATGAGCGAGTTCCAGGAAGCCCACACCGT
GTCCACCCTCAAGGGCGCCCCGCCGGGCTATGTCGGCTACGGCGAAGGTGGCGTGCTCACCGAAGCGGTACGGCGCAAGC
CCTACAGCGTGGTGCTGCTGGACGAAGTGGAAAAGGCCCACCCGGACGTGCACGAGATCTTCTTCCAGGTATTCGACAAG
GGCGTCATGGAAGACGGCGAAGGCCGCATGATCGACTTCAAGAACACCCTGATCCTGCTCACCACCAACGCCGGCACCGA
GCTGATCGCCAACGTCTGCAAGAACCCGCAGGCGGTGCCCGAGCCGGAGGAAATCGCCAAGGCCCTGCGCCAGCCACTGC
TGGAGATCTTCCCGCCGGCACTGCTGGGGCGCCTGGTGACCATTCCCTACTACCCGCTGAGCGACGAGATGCTCAAGGCC
ATCACCCGCCTGCAACTGGGGCGGATCAAGAAGCGCGTGGAAAGCACCCACAAGGTGGATTTCGATTTCGACGACGAGGT
CATCGACCTGATCGTCTCGCGCTGCACCGAGACCGAAAGCGGCGGGCGGATGATCGACGCCATCCTGACCAACAGCCTGC
TGCCGGACATGAGCCGCGAGTTCCTCAACCGCATGCTCGAAGGCCGCGCCCTGGCCGGGGTGCGCATCAGCCAGCGCGAC
AACGAACTGCACTACGACTTCAGCGAGCCGGCCTGA