Detailed information of component protein
Summary
| Component ID | T6CP008074 |
| Component protein type | TssF |
| T6SS ID (Type) | T6SS00764  (Type i3) |
| Strain | Pseudomonas protegens CHA0 |
| Replicon | chromosome |
| Sequence | Protein sequence (620 a.a.); Nucleotide sequence (1860 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 6711020..6712879 (+) |
| NCBI ID | WP_011064259.1 |
| RefSeq | NC_021237 |
| Uniprot ID | A0A2C9EWE0_PSEPH, A0A1K2A965_9PSED, A0A2T0Z7R2_9PSED, Q4K3N4_PSEF5 |
| KEGG ID | pfl:PFL_6091, pprc:PFLCHA0_c60500 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-619 | MNPRLLELYNQELHHVRESAAEFAKEFPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQADPDEGSLSSGFTLERDTSLRAALGRDTQTCCEYRTAHSVTLWPLQVAQAEYFGNPSAVLGRLAASEPRAKAGLRLTLRTGAELPFNSLALDELPLYLNGNDEQPFRLYEQLLGNVCAVFARAPGGDWVERLPPDALRSRGFDDRDAALPVVPQAFQGYRLLQEYFALPNRFLFVEFAQLGRAVQRCAGQELELIVLFERFDQSLEGSVGTAQFVPFCTPAINLFPKRLDRIHLSDRVNEHHVIADRTRPMDFEVHSLTAISGHGTGPEQPFLPFYAVRDPSRYGRDQSYYIVRREPRVLSSDQRRNGPRSTYIGSESFVSLVDSQQAPYRHDLRQLGVSALCTNRDLPLFMNTGNGKTDFTLADSAPVQAIRCLAGPSRPRPSHAHDGKAWRLISQLSLNYLSLSEQGQGAAALRELLRLYGDSNDAALQLQIEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVSINSFTETVIRTTERGEIMRWKAKPGRRPTL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9920 | - | - |
Protein sequence: 620 a.a.
Nucleotide sequence: 1860 bp