Detailed information of component protein


Summary

Component ID T6CP008073
Component protein type TssE
T6SS ID (Type) T6SS00764 experimental (Type i3)
Strain Pseudomonas protegens CHA0
Replicon chromosome
Sequence Protein sequence (172 a.a.); Nucleotide sequence (516 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PFLCHA0_RS30165
Coordinate (Strand) 6710508..6711023 (+)
NCBI ID WP_011064258.1
RefSeq NC_021237
Uniprot ID Q4K3N5_PSEF5
KEGG ID pfl:PFL_6090
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 3.6e-22 40..142

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-171 MVTDIAARDRLQPSLLDRLTDDEPGNLKESPDKRVLSLSQLKASVLRDLAWLLNTTSLLEADATLHTPAGTSVVNYGLPALAGYSASSIDIPALEALIHQAIATFEPRILRSTLRVRARTAPGEMNHNALSFEIEGDLWAQPMPLRLLLQTDMDLESGHVRVVHADSRRRS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9858 - -



  Protein sequence: 172 a.a.    

>T6CP008073 NC_021237:6710508-6711023 [Pseudomonas protegens CHA0] [TssE]
MVTDIAARDRLQPSLLDRLTDDEPGNLKESPDKRVLSLSQLKASVLRDLAWLLNTTSLLEADATLHTPAGTSVVNYGLPA
LAGYSASSIDIPALEALIHQAIATFEPRILRSTLRVRARTAPGEMNHNALSFEIEGDLWAQPMPLRLLLQTDMDLESGHV
RVVHADSRRRS*

  Nucleotide sequence: 516 bp    

>T6CP008073 NC_021237:6710508-6711023 [Pseudomonas protegens CHA0] [TssE]
TTGGTAACCGACATCGCCGCCCGCGATCGCTTGCAACCCTCCCTGCTGGATCGTCTGACCGACGATGAACCCGGCAACCT
GAAAGAAAGCCCGGACAAACGCGTGCTGTCCCTGAGCCAGCTCAAGGCCTCGGTACTGCGCGACCTGGCATGGCTGCTCA
ACACCACTTCCCTGCTGGAAGCCGACGCCACCCTGCACACCCCCGCCGGTACTTCGGTGGTCAACTACGGCCTGCCGGCC
CTGGCCGGGTACAGCGCTTCGAGCATCGATATCCCGGCCCTGGAGGCGCTGATCCACCAGGCCATCGCCACCTTTGAGCC
GCGCATCCTGCGCAGCACCCTGCGGGTACGCGCACGCACCGCGCCCGGGGAAATGAACCACAACGCCCTGAGCTTCGAGA
TCGAAGGCGACCTCTGGGCCCAGCCGATGCCCCTGCGCCTGCTGCTGCAAACCGACATGGACCTGGAATCGGGCCACGTA
CGAGTAGTGCACGCCGACTCCCGGAGGCGCTCATGA