Detailed information of component protein
Summary
| Component ID | T6CP008073 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00764  (Type i3) |
| Strain | Pseudomonas protegens CHA0 |
| Replicon | chromosome |
| Sequence | Protein sequence (172 a.a.); Nucleotide sequence (516 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PFLCHA0_RS30165 |
| Coordinate (Strand) | 6710508..6711023 (+) |
| NCBI ID | WP_011064258.1 |
| RefSeq | NC_021237 |
| Uniprot ID | A0A1K2ABD7_9PSED, A0A2T0Z770_9PSED, Q4K3N5_PSEF5 |
| KEGG ID | pfl:PFL_6090 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 3.6e-22 | 40..142 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-171 | MVTDIAARDRLQPSLLDRLTDDEPGNLKESPDKRVLSLSQLKASVLRDLAWLLNTTSLLEADATLHTPAGTSVVNYGLPALAGYSASSIDIPALEALIHQAIATFEPRILRSTLRVRARTAPGEMNHNALSFEIEGDLWAQPMPLRLLLQTDMDLESGHVRVVHADSRRRS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9858 | - | - |
Protein sequence: 172 a.a.
>T6CP008073 NC_021237:6710508-6711023 [Pseudomonas protegens CHA0] [TssE]
MVTDIAARDRLQPSLLDRLTDDEPGNLKESPDKRVLSLSQLKASVLRDLAWLLNTTSLLEADATLHTPAGTSVVNYGLPA
LAGYSASSIDIPALEALIHQAIATFEPRILRSTLRVRARTAPGEMNHNALSFEIEGDLWAQPMPLRLLLQTDMDLESGHV
RVVHADSRRRS*
MVTDIAARDRLQPSLLDRLTDDEPGNLKESPDKRVLSLSQLKASVLRDLAWLLNTTSLLEADATLHTPAGTSVVNYGLPA
LAGYSASSIDIPALEALIHQAIATFEPRILRSTLRVRARTAPGEMNHNALSFEIEGDLWAQPMPLRLLLQTDMDLESGHV
RVVHADSRRRS*
Nucleotide sequence: 516 bp
>T6CP008073 NC_021237:6710508-6711023 [Pseudomonas protegens CHA0] [TssE]
TTGGTAACCGACATCGCCGCCCGCGATCGCTTGCAACCCTCCCTGCTGGATCGTCTGACCGACGATGAACCCGGCAACCT
GAAAGAAAGCCCGGACAAACGCGTGCTGTCCCTGAGCCAGCTCAAGGCCTCGGTACTGCGCGACCTGGCATGGCTGCTCA
ACACCACTTCCCTGCTGGAAGCCGACGCCACCCTGCACACCCCCGCCGGTACTTCGGTGGTCAACTACGGCCTGCCGGCC
CTGGCCGGGTACAGCGCTTCGAGCATCGATATCCCGGCCCTGGAGGCGCTGATCCACCAGGCCATCGCCACCTTTGAGCC
GCGCATCCTGCGCAGCACCCTGCGGGTACGCGCACGCACCGCGCCCGGGGAAATGAACCACAACGCCCTGAGCTTCGAGA
TCGAAGGCGACCTCTGGGCCCAGCCGATGCCCCTGCGCCTGCTGCTGCAAACCGACATGGACCTGGAATCGGGCCACGTA
CGAGTAGTGCACGCCGACTCCCGGAGGCGCTCATGA
TTGGTAACCGACATCGCCGCCCGCGATCGCTTGCAACCCTCCCTGCTGGATCGTCTGACCGACGATGAACCCGGCAACCT
GAAAGAAAGCCCGGACAAACGCGTGCTGTCCCTGAGCCAGCTCAAGGCCTCGGTACTGCGCGACCTGGCATGGCTGCTCA
ACACCACTTCCCTGCTGGAAGCCGACGCCACCCTGCACACCCCCGCCGGTACTTCGGTGGTCAACTACGGCCTGCCGGCC
CTGGCCGGGTACAGCGCTTCGAGCATCGATATCCCGGCCCTGGAGGCGCTGATCCACCAGGCCATCGCCACCTTTGAGCC
GCGCATCCTGCGCAGCACCCTGCGGGTACGCGCACGCACCGCGCCCGGGGAAATGAACCACAACGCCCTGAGCTTCGAGA
TCGAAGGCGACCTCTGGGCCCAGCCGATGCCCCTGCGCCTGCTGCTGCAAACCGACATGGACCTGGAATCGGGCCACGTA
CGAGTAGTGCACGCCGACTCCCGGAGGCGCTCATGA