Detailed information of component protein


Summary

Component ID T6CP008072
Component protein type TssD
T6SS ID (Type) T6SS00764 experimental (Type i3)
Strain Pseudomonas protegens CHA0
Replicon chromosome
Sequence Protein sequence (163 a.a.); Nucleotide sequence (489 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PFLCHA0_RS30160
Coordinate (Strand) 6709859..6710347 (+)
NCBI ID WP_011064257.1
RefSeq NC_021237
Uniprot ID A0A2C9EVR8_PSEPH, A0A0D6BS68_9PSED, A0A365W397_9PSED, Q4K3N6_PSEF5, A0A7Y1CEL3_9PSED, A0A7U9LBB1_PSEFL, A0A2K2WMX1_9PSED, A0A7V8J9W7_9PSED
KEGG ID pfl:PFL_6089, pprc:PFLCHA0_c60480, psos:POS17_6046
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.7e-42 6..136

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-162 MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCSSGKHIDKVRLTVRKAGGESQVEYMIIDLEEVLITSLSTGGSGSDDRLTENITLNFAQVMVEYQPQKADGTKDGGPIKYGWNIRSNTKR



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9768 - -



  Protein sequence: 163 a.a.    

>T6CP008072 NC_021237:6709859-6710347 [Pseudomonas protegens CHA0] [TssD]
MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCSSGKHID
KVRLTVRKAGGESQVEYMIIDLEEVLITSLSTGGSGSDDRLTENITLNFAQVMVEYQPQKADGTKDGGPIKYGWNIRSNT
KR*

  Nucleotide sequence: 489 bp    

>T6CP008072 NC_021237:6709859-6710347 [Pseudomonas protegens CHA0] [TssD]
ATGGCTGTTGATATTTTCATCAAGATCGGTGACATCAAGGGCGAGTCCATGGACAAAGCCCACAAGGACGAAATCGACGT
GTTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTTGGCGGTGGCGGCGGCGCGGGCAAGGTGAACATCC
AGGACCTGTCGCTGACCAAGTACGTGGACAAGGCATCGCCGAACCTGATGATGCATTGCTCCAGCGGCAAGCACATCGAC
AAGGTGCGCCTGACCGTGCGCAAGGCCGGCGGCGAAAGCCAGGTCGAGTACATGATCATCGACCTGGAAGAAGTGCTGAT
CACTTCGCTGAGCACCGGCGGTTCGGGCAGCGATGACCGCCTGACCGAAAACATCACCCTGAACTTCGCTCAGGTGATGG
TCGAGTACCAGCCGCAGAAAGCCGACGGCACCAAGGACGGCGGCCCGATCAAGTACGGCTGGAACATCCGCTCCAACACC
AAGCGCTGA