Detailed information of component protein
Summary
| Component ID | T6CP008072 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00764  (Type i3) |
| Strain | Pseudomonas protegens CHA0 |
| Replicon | chromosome |
| Sequence | Protein sequence (163 a.a.); Nucleotide sequence (489 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PFLCHA0_RS30160 |
| Coordinate (Strand) | 6709859..6710347 (+) |
| NCBI ID | WP_011064257.1 |
| RefSeq | NC_021237 |
| Uniprot ID | A0A2C9EVR8_PSEPH, A0A0D6BS68_9PSED, A0A1K2AA95_9PSED, A0A2T0Z783_9PSED, A0A365W397_9PSED, Q4K3N6_PSEF5, A0A7Y9VBQ3_9PSED, A0A7Y1CEL3_9PSED, A0A7U9LBB1_PSEFL, A0A2K2WMX1_9PSED, A0A7V8J9W7_9PSED |
| KEGG ID | pfl:PFL_6089, pprc:PFLCHA0_c60480, psos:POS17_6046 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.7e-42 | 6..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-162 | MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCSSGKHIDKVRLTVRKAGGESQVEYMIIDLEEVLITSLSTGGSGSDDRLTENITLNFAQVMVEYQPQKADGTKDGGPIKYGWNIRSNTKR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9768 | - | - |
Protein sequence: 163 a.a.
>T6CP008072 NC_021237:6709859-6710347 [Pseudomonas protegens CHA0] [TssD]
MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCSSGKHID
KVRLTVRKAGGESQVEYMIIDLEEVLITSLSTGGSGSDDRLTENITLNFAQVMVEYQPQKADGTKDGGPIKYGWNIRSNT
KR*
MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCSSGKHID
KVRLTVRKAGGESQVEYMIIDLEEVLITSLSTGGSGSDDRLTENITLNFAQVMVEYQPQKADGTKDGGPIKYGWNIRSNT
KR*
Nucleotide sequence: 489 bp
>T6CP008072 NC_021237:6709859-6710347 [Pseudomonas protegens CHA0] [TssD]
ATGGCTGTTGATATTTTCATCAAGATCGGTGACATCAAGGGCGAGTCCATGGACAAAGCCCACAAGGACGAAATCGACGT
GTTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTTGGCGGTGGCGGCGGCGCGGGCAAGGTGAACATCC
AGGACCTGTCGCTGACCAAGTACGTGGACAAGGCATCGCCGAACCTGATGATGCATTGCTCCAGCGGCAAGCACATCGAC
AAGGTGCGCCTGACCGTGCGCAAGGCCGGCGGCGAAAGCCAGGTCGAGTACATGATCATCGACCTGGAAGAAGTGCTGAT
CACTTCGCTGAGCACCGGCGGTTCGGGCAGCGATGACCGCCTGACCGAAAACATCACCCTGAACTTCGCTCAGGTGATGG
TCGAGTACCAGCCGCAGAAAGCCGACGGCACCAAGGACGGCGGCCCGATCAAGTACGGCTGGAACATCCGCTCCAACACC
AAGCGCTGA
ATGGCTGTTGATATTTTCATCAAGATCGGTGACATCAAGGGCGAGTCCATGGACAAAGCCCACAAGGACGAAATCGACGT
GTTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTTGGCGGTGGCGGCGGCGCGGGCAAGGTGAACATCC
AGGACCTGTCGCTGACCAAGTACGTGGACAAGGCATCGCCGAACCTGATGATGCATTGCTCCAGCGGCAAGCACATCGAC
AAGGTGCGCCTGACCGTGCGCAAGGCCGGCGGCGAAAGCCAGGTCGAGTACATGATCATCGACCTGGAAGAAGTGCTGAT
CACTTCGCTGAGCACCGGCGGTTCGGGCAGCGATGACCGCCTGACCGAAAACATCACCCTGAACTTCGCTCAGGTGATGG
TCGAGTACCAGCCGCAGAAAGCCGACGGCACCAAGGACGGCGGCCCGATCAAGTACGGCTGGAACATCCGCTCCAACACC
AAGCGCTGA