Detailed information of component protein


Summary

Component ID T6CP008069
Component protein type TssA
T6SS ID (Type) T6SS00764 experimental (Type i3)
Strain Pseudomonas protegens CHA0
Replicon chromosome
Sequence Protein sequence (340 a.a.); Nucleotide sequence (1020 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PFLCHA0_RS30145
Coordinate (Strand) 6706614..6707633 (+)
NCBI ID WP_041752688.1
RefSeq NC_021237
Uniprot ID UPI00039EFB8D
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 3.1e-33 7..130
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-339 VDVPMLLAAVSATSPCGEDLEYDADFLHLERAAQGQPERSMGDSILPAEPPDWRSIQQQSLDLLARSKDLRITHFLLQSTLALEGLPGLATSLELIDGLLRDYWADLHPRLDADDDNDPTVRINALAGLASDTTIGLLREAILTRSRTFGPVSLRAALNAAGLQHFSGESLGSDHLAGALQDSDPEHLDAIRSALNAARSAAESIEKQVSEQVGSASGVDLTALKQPLRLALQVLGQHAPQGAQNAVEEHADGPSTEEPGAPAAPAPVRISGEISSREDVLRSLDRLLAYYSRHEPSSPLPVLLNRAKNLVNADFAAIVRNLIPDGMSQFENLRGPESD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.4627 - -


  Protein sequence: 340 a.a.    

>T6CP008069 NC_021237:6706614-6707633 [Pseudomonas protegens CHA0] [TssA]
VDVPMLLAAVSATSPCGEDLEYDADFLHLERAAQGQPERSMGDSILPAEPPDWRSIQQQSLDLLARSKDLRITHFLLQST
LALEGLPGLATSLELIDGLLRDYWADLHPRLDADDDNDPTVRINALAGLASDTTIGLLREAILTRSRTFGPVSLRAALNA
AGLQHFSGESLGSDHLAGALQDSDPEHLDAIRSALNAARSAAESIEKQVSEQVGSASGVDLTALKQPLRLALQVLGQHAP
QGAQNAVEEHADGPSTEEPGAPAAPAPVRISGEISSREDVLRSLDRLLAYYSRHEPSSPLPVLLNRAKNLVNADFAAIVR
NLIPDGMSQFENLRGPESD*

  Nucleotide sequence: 1020 bp    

>T6CP008069 NC_021237:6706614-6707633 [Pseudomonas protegens CHA0] [TssA]
GTGGATGTACCGATGTTGCTCGCCGCGGTTTCAGCAACTTCGCCTTGTGGCGAAGACCTGGAATATGACGCGGATTTCTT
GCACTTGGAGCGGGCCGCACAGGGCCAGCCCGAGCGCAGCATGGGCGACTCGATCCTGCCGGCCGAGCCGCCGGACTGGC
GCAGCATCCAGCAACAGAGCCTGGACCTGCTGGCGCGCAGCAAAGACCTGCGCATCACCCACTTCCTCCTGCAGAGCACC
CTGGCCCTCGAAGGCCTGCCGGGCCTGGCCACCAGCCTCGAACTGATCGACGGCCTGCTCCGGGATTACTGGGCGGACCT
GCATCCGCGCCTGGACGCCGACGACGACAACGACCCCACGGTGCGTATCAACGCCCTGGCCGGCCTGGCGTCCGACACCA
CCATCGGCCTGCTCCGCGAAGCCATCCTGACCCGTTCCCGGACCTTCGGCCCGGTGAGCCTGCGAGCCGCGCTGAACGCC
GCCGGCCTGCAGCACTTTTCCGGCGAGAGCCTGGGCTCCGACCACCTGGCCGGCGCCCTGCAAGACAGCGACCCCGAGCA
CCTGGATGCGATTCGCAGCGCCTTGAACGCAGCCCGCTCGGCGGCCGAAAGCATCGAGAAACAGGTCAGCGAACAAGTAG
GCTCGGCCAGCGGTGTAGACCTCACGGCCCTCAAGCAACCCCTGCGCCTGGCGCTGCAGGTGCTGGGCCAGCACGCCCCG
CAAGGCGCGCAGAACGCGGTCGAGGAACACGCCGATGGGCCGTCCACCGAAGAGCCCGGTGCGCCCGCAGCGCCAGCCCC
GGTACGGATTTCCGGCGAGATCAGCAGCCGCGAAGACGTGCTGCGCAGCCTTGACCGGCTGCTGGCCTACTACAGCCGCC
ACGAGCCTTCGAGCCCGTTGCCGGTGCTGCTCAACCGGGCCAAGAACCTGGTCAACGCCGACTTCGCGGCCATCGTGCGC
AATCTGATTCCCGACGGCATGTCCCAATTTGAAAACCTGCGCGGCCCTGAATCCGACTAA