Detailed information of component protein


Summary

Component ID T6CP008067
Component protein type TssK
T6SS ID (Type) T6SS00764 experimental (Type i3)
Strain Pseudomonas protegens CHA0
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PFLCHA0_RS30130
Coordinate (Strand) 6702816..6704150 (-)
NCBI ID WP_011064251.1
RefSeq NC_021237
Uniprot ID A0A2C9EVT4_PSEPH, Q4K3P2_PSEF5, A0A7U9Q4L9_PSEFL
KEGG ID pfl:PFL_6083, pprc:PFLCHA0_c60420
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.6e-157 19..442

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MSWNNRVVWSEGMFIGTQHFQQHDRYLENLIDARSRPLSTGAWGFSELRIDQGLLAQGKLAIVSARGLLPDGTPFNIPHDDLAPSPLCIDDNLRDGLVYLALPLKRAGARDTVDEGEELGGARYLSQVREVRDDNAPFENRAPVAVGSRALRLLTAQDGLSDYAAIGVVRVKEKRADRALVLDDSYIPPVLDVAASKPLSAFRSELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQLVNRAQPLVNHLSQISPLHPERLFSELVSLAGEFSTFTHSARRPEQYPQYQHDELAMSFAPVMQALREALSMLIDSKATPIPIVEKAYGVHVAMLADRTLLENASFILVVRADVPGETLRGRFAQQSKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPYHAGSTYYELDRGSEHWKQLVHSGGFAFHVAGEFPGLNLAFWAIRG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9941 - -



  Protein sequence: 445 a.a.    

>T6CP008067 NC_021237:c6704150-6702816 [Pseudomonas protegens CHA0] [TssK]
MSWNNRVVWSEGMFIGTQHFQQHDRYLENLIDARSRPLSTGAWGFSELRIDQGLLAQGKLAIVSARGLLPDGTPFNIPHD
DLAPSPLCIDDNLRDGLVYLALPLKRAGARDTVDEGEELGGARYLSQVREVRDDNAPFENRAPVAVGSRALRLLTAQDGL
SDYAAIGVVRVKEKRADRALVLDDSYIPPVLDVAASKPLSAFRSELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQL
VNRAQPLVNHLSQISPLHPERLFSELVSLAGEFSTFTHSARRPEQYPQYQHDELAMSFAPVMQALREALSMLIDSKATPI
PIVEKAYGVHVAMLADRTLLENASFILVVRADVPGETLRGRFAQQSKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPYH
AGSTYYELDRGSEHWKQLVHSGGFAFHVAGEFPGLNLAFWAIRG*

  Nucleotide sequence: 1335 bp    

>T6CP008067 NC_021237:c6704150-6702816 [Pseudomonas protegens CHA0] [TssK]
ATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATTGGAACCCAGCACTTCCAGCAGCATGACCGTTACCT
GGAAAACCTCATCGACGCCCGCAGCCGCCCGCTGTCGACGGGAGCCTGGGGGTTCTCCGAGCTGCGTATCGATCAGGGCC
TGCTGGCCCAGGGCAAGCTGGCCATCGTCAGCGCCCGTGGCCTGCTGCCTGACGGCACGCCGTTCAACATTCCCCATGAC
GACCTGGCGCCCAGCCCGTTGTGCATCGACGACAACCTGCGTGACGGCCTGGTGTACCTGGCGCTGCCCCTCAAGCGCGC
CGGCGCCCGGGACACCGTGGACGAGGGCGAAGAGCTGGGCGGTGCCCGCTACCTGAGCCAGGTGCGCGAGGTGCGTGACG
ACAACGCACCGTTCGAGAACCGCGCGCCGGTGGCCGTGGGCTCTCGGGCCCTGCGCCTGCTCACCGCCCAGGACGGCCTC
AGCGACTACGCCGCCATTGGCGTGGTGCGGGTCAAGGAGAAACGCGCCGACCGTGCTCTGGTGCTGGACGACAGCTACAT
TCCGCCGGTGCTGGACGTGGCCGCGTCCAAGCCGTTGAGCGCCTTTCGCAGCGAGCTGCTGGGCCTGCTGCACCAGCGCG
GCGAGGCCCTGGCCGGGCGCGTGGTGGCATCGGGCGCGGGGGGCGCTTCGGAAATCGCCGACTTCATGCTCCTGCAACTG
GTGAACCGCGCCCAGCCCCTGGTCAACCACCTGAGCCAGATCAGCCCGCTGCACCCCGAGCGCCTGTTCAGCGAGCTGGT
GAGCCTGGCCGGCGAGTTCTCGACCTTCACCCACAGCGCCCGGCGCCCTGAGCAATACCCGCAGTACCAGCACGATGAGC
TGGCCATGAGTTTCGCCCCGGTGATGCAGGCCCTGCGTGAAGCGCTGTCGATGCTGATCGACAGCAAGGCAACGCCGATC
CCCATCGTCGAGAAAGCCTACGGCGTACACGTGGCGATGCTGGCCGACCGCACCCTGCTGGAGAACGCCAGCTTCATCCT
GGTGGTGCGTGCCGACGTGCCGGGCGAAACCCTGCGCGGGCGCTTTGCCCAGCAGAGCAAGGTGGGTTCGGTGGAGCACA
TCCGCGACCTGGTCAACCTGCAGCTGCCGGGCATCGGCCTGCTGCCGCTGCCGGTGGCGCCGCGGCAACTGCCGTACCAC
GCAGGCTCGACCTACTACGAGCTGGACCGTGGCAGCGAGCACTGGAAACAACTGGTTCACTCCGGCGGCTTCGCGTTCCA
CGTCGCGGGAGAATTCCCGGGCTTGAACCTGGCCTTCTGGGCCATTCGAGGATAA