Detailed information of component protein


Summary

Component ID T6CP007586
Component protein type TssK
T6SS ID (Type) T6SS00720 experimental (Type i5)
Strain Vibrio parahaemolyticus BB22OP
Replicon chromosome II
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPBB_RS19990
Coordinate (Strand) 1068907..1070232 (-)
NCBI ID WP_072828580.1
RefSeq NC_019971
Uniprot ID UPI000934F68C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5.2e-122 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MMQYSKTAWCEGMFLRPQHFQQHERAISNEYKGLHSLGGSYNWGVWNCRVKEHALKTGLIELDNLQAILPDMTLIDFSATTSFLSPLKVKKGTENTLVKVIVPLSKVSSKMIADPSETTVSRYLLQDLDVIDNLTGQDEETIQVASLNIELKSSNEQLTGYIELPILKIKEVSTEGEVILDDSYVPPLLNLLNDKVMTGYLRNAMAMTKIRADVIAQRLVKGKAASASAVDFIMLQMLNRYEAILKHFSELEKVHPLELATTFKGYIGELATFSHTTKRLPNLKAYDHLEVASVFVELNQVLSQYLSVVLDQTASKLPLEVRQYGIQVTPLPDKRLLESCQFVLAIKADTTTDEIRRLVPAQLKLGPAEQIRDLINNQINGINVAPLSVVPRQIPYQTGYVYFEVVKKGPFWMRLKDSGGIALHLSGHFPNPDIELWSINQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9884 - -


  Protein sequence: 442 a.a.    

>T6CP007586 NC_019971:c1070232-1068907 [Vibrio parahaemolyticus BB22OP] [TssK]
MMQYSKTAWCEGMFLRPQHFQQHERAISNEYKGLHSLGGSYNWGVWNCRVKEHALKTGLIELDNLQAILPDMTLIDFSAT
TSFLSPLKVKKGTENTLVKVIVPLSKVSSKMIADPSETTVSRYLLQDLDVIDNLTGQDEETIQVASLNIELKSSNEQLTG
YIELPILKIKEVSTEGEVILDDSYVPPLLNLLNDKVMTGYLRNAMAMTKIRADVIAQRLVKGKAASASAVDFIMLQMLNR
YEAILKHFSELEKVHPLELATTFKGYIGELATFSHTTKRLPNLKAYDHLEVASVFVELNQVLSQYLSVVLDQTASKLPLE
VRQYGIQVTPLPDKRLLESCQFVLAIKADTTTDEIRRLVPAQLKLGPAEQIRDLINNQINGINVAPLSVVPRQIPYQTGY
VYFEVVKKGPFWMRLKDSGGIALHLSGHFPNPDIELWSINQ*

  Nucleotide sequence: 1326 bp    

>T6CP007586 NC_019971:c1070232-1068907 [Vibrio parahaemolyticus BB22OP] [TssK]
ATGATGCAATACTCCAAGACGGCTTGGTGCGAGGGGATGTTTCTGCGTCCCCAGCATTTTCAACAGCACGAACGCGCAAT
ATCTAATGAATATAAAGGCTTACACAGTTTAGGGGGCTCATATAACTGGGGCGTTTGGAATTGCCGTGTAAAAGAACATG
CCTTAAAAACAGGCTTGATTGAACTTGATAATCTTCAAGCAATTCTTCCTGATATGACGCTGATAGACTTTTCAGCAACA
ACAAGTTTTCTGTCTCCTTTAAAGGTAAAAAAAGGGACGGAAAATACCTTAGTGAAGGTGATCGTTCCACTCTCAAAAGT
CAGCAGTAAAATGATCGCGGATCCAAGTGAAACAACGGTTTCTCGGTATTTACTTCAAGATCTAGATGTTATTGATAACC
TGACGGGCCAAGATGAAGAAACGATTCAAGTGGCCTCATTAAATATCGAGCTGAAATCAAGCAATGAGCAGTTAACAGGT
TATATAGAGCTACCAATCCTTAAGATTAAAGAAGTTTCTACGGAAGGAGAGGTCATTCTTGATGACTCTTACGTACCACC
ACTTCTAAACTTGTTAAATGACAAGGTGATGACAGGGTATCTACGTAATGCAATGGCAATGACCAAGATACGCGCAGATG
TTATCGCTCAACGACTTGTTAAAGGAAAAGCGGCTTCAGCATCTGCGGTAGATTTCATAATGCTACAAATGTTGAATCGA
TATGAAGCCATATTGAAGCATTTTAGTGAGCTGGAGAAAGTACACCCCTTAGAGCTTGCGACAACCTTTAAAGGCTACAT
AGGCGAGTTGGCAACGTTTTCTCACACCACCAAGCGCTTACCTAATCTCAAAGCTTACGATCACCTTGAAGTTGCAAGTG
TGTTTGTTGAACTTAATCAAGTCCTTAGTCAGTACTTGAGTGTCGTTCTTGATCAGACTGCAAGCAAGTTGCCACTAGAA
GTACGCCAGTACGGTATTCAAGTGACACCACTTCCAGATAAGCGACTATTGGAATCATGTCAGTTTGTATTGGCGATTAA
AGCGGACACAACAACGGATGAGATTAGACGCTTAGTCCCTGCGCAATTGAAGCTTGGTCCGGCAGAACAGATTAGAGATC
TAATCAACAACCAGATTAATGGAATTAACGTAGCTCCTTTAAGTGTCGTGCCGCGACAGATTCCATATCAAACCGGGTAT
GTTTATTTTGAGGTCGTTAAGAAGGGGCCATTCTGGATGCGACTTAAAGACAGCGGTGGTATTGCACTGCATTTATCTGG
TCATTTCCCAAATCCGGACATAGAGCTTTGGAGCATTAATCAATAA