Detailed information of component protein


Summary

Component ID T6CP007585
Component protein type TssL
T6SS ID (Type) T6SS00720 experimental (Type i5)
Strain Vibrio parahaemolyticus BB22OP
Replicon chromosome II
Sequence Protein sequence (431 a.a.); Nucleotide sequence (1293 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPBB_RS19985
Coordinate (Strand) 1067603..1068895 (-)
NCBI ID WP_015313312.1
RefSeq NC_019971
Uniprot ID UPI0002A5794F
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.1e-55 50..252
OmpA PF00691.22 2e-13 322..420
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-229 MEQTIVKPTPGGRAAVSKAQPQRSADSTVVISKSPELVNNDSVVAYGDNPLLAEANGLLSIIGQIRATATHSDPLFLKETLAQKLRDYENRLRQHDVDLETIDTARYCLCCSLDEAVLNTNWGSQSFWTHDSLLSSFYASSQGGEAFFKHLDSCLAHPESHLDLLELMYVCLSLGFIGQYRLEKNGLEAHRRLRKQVVSVLKSHGRGVQQELSNKVEQHILAGAQVSER
Transmembrane helix 230-252 APLWVVCSVTSALLVCIFMYFSY
Inside 253-430 ELNKASNQTFAQLVNLIQPTPAVSNPMVESKSAPIAERISMYLATEIGKDLVTVEALQDRVRISLKAQDLFESGSASVVAYIQPVISKVARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIPEGLGDARPLVENDSEENRAMNRRIEIDLIVGN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9408 - -


  Protein sequence: 431 a.a.    

>T6CP007585 NC_019971:c1068895-1067603 [Vibrio parahaemolyticus BB22OP] [TssL]
MEQTIVKPTPGGRAAVSKAQPQRSADSTVVISKSPELVNNDSVVAYGDNPLLAEANGLLSIIGQIRATATHSDPLFLKET
LAQKLRDYENRLRQHDVDLETIDTARYCLCCSLDEAVLNTNWGSQSFWTHDSLLSSFYASSQGGEAFFKHLDSCLAHPES
HLDLLELMYVCLSLGFIGQYRLEKNGLEAHRRLRKQVVSVLKSHGRGVQQELSNKVEQHILAGAQVSERAPLWVVCSVTS
ALLVCIFMYFSYELNKASNQTFAQLVNLIQPTPAVSNPMVESKSAPIAERISMYLATEIGKDLVTVEALQDRVRISLKAQ
DLFESGSASVVAYIQPVISKVARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIPEG
LGDARPLVENDSEENRAMNRRIEIDLIVGN*

  Nucleotide sequence: 1293 bp    

>T6CP007585 NC_019971:c1068895-1067603 [Vibrio parahaemolyticus BB22OP] [TssL]
ATGGAACAGACGATAGTAAAACCTACTCCTGGCGGAAGAGCGGCTGTATCTAAAGCTCAGCCTCAAAGATCAGCAGACAG
TACTGTTGTGATATCCAAAAGCCCTGAGTTGGTTAACAACGATTCAGTTGTTGCTTATGGAGATAATCCACTATTGGCAG
AAGCTAATGGTCTACTTTCGATTATTGGACAAATCAGAGCAACAGCTACTCATTCCGATCCTTTGTTTCTTAAAGAAACG
CTCGCGCAAAAACTTAGGGATTATGAGAATCGTCTGCGTCAACATGATGTTGACTTGGAAACCATTGATACCGCACGTTA
TTGTCTGTGCTGTTCTTTAGACGAAGCAGTATTGAATACCAATTGGGGGAGTCAATCGTTTTGGACACATGATTCTCTGT
TGAGTTCTTTTTACGCGAGCAGCCAAGGTGGAGAGGCTTTTTTTAAGCATCTAGATAGCTGTTTGGCTCATCCGGAATCC
CACCTAGATTTACTAGAGCTAATGTACGTATGCTTATCTTTGGGTTTTATAGGTCAGTATCGTTTAGAAAAAAATGGGCT
TGAAGCTCACCGTAGATTGAGAAAACAAGTTGTATCAGTGCTTAAGTCACATGGTCGCGGAGTACAGCAAGAGCTTAGTA
ACAAAGTAGAACAACATATATTGGCAGGTGCTCAGGTTTCGGAACGTGCTCCTCTATGGGTGGTTTGTTCGGTAACTTCC
GCACTGCTTGTTTGTATTTTTATGTACTTCAGCTACGAGTTGAACAAAGCTTCCAACCAAACTTTTGCTCAATTGGTAAA
CCTGATTCAACCAACCCCAGCAGTTAGTAATCCTATGGTTGAGTCAAAGTCAGCACCTATTGCCGAAAGAATATCTATGT
ATTTGGCAACGGAGATTGGCAAGGATCTTGTCACTGTGGAAGCGTTGCAAGATAGAGTTCGTATTTCTCTTAAAGCTCAA
GACCTATTTGAATCTGGTAGTGCGAGCGTTGTGGCTTACATACAGCCAGTTATTTCTAAAGTTGCACGCACCTTAGAAGC
GACACAAGGGAAGATCATAATTACCGGGCATACCGATGACCGTCCGATATTTACCAGCAAGTACCCATCCAATTGGCACT
TGTCTTTAGCTCGGGCAACTTCTCTTTCCGAACAGTTAATCTCCAACAGTGCACTTAAAGGAAGAGTGATTCCTGAAGGG
TTGGGTGATGCGAGACCTTTGGTAGAAAATGACAGTGAAGAGAACCGAGCAATGAATCGTCGAATTGAAATCGACCTTAT
TGTGGGCAACTAA