Detailed information of component protein


Summary

Component ID T6CP007581
Component protein type TssC
T6SS ID (Type) T6SS00720 experimental (Type i5)
Strain Vibrio parahaemolyticus BB22OP
Replicon chromosome II
Sequence Protein sequence (504 a.a.); Nucleotide sequence (1512 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPBB_RS19950
Coordinate (Strand) 1057869..1059380 (-)
NCBI ID WP_015313306.1
RefSeq NC_019971
Uniprot ID UPI0002A57F40
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.2e-106 67..377
VipB_2 PF18945.2 1.2e-41 388..497
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-503 MTKIDALNFLDPEELTHEFTPMGLAEFDSHWLTQFVECSDSTLAARIWLEGTQSKDFASFRHSIVSTINTIDTLLQKQLNEIIHHPDFQKLECSWVGVRYLCEQVDKPSSDSVKIKVLSATWNEVSKDALKAIEFDQSALFKLLYQNEYGMAGGEPFGVVVGDYQLRYDPRTNYFDRDISVLSKISQSAAAAFSPFVMSASPEIFGVNTFAELSSTRDVAAQFEQIDYVKWRQLRDNDDTKFIGLTAPNVLFRQPYKSDGSRNDQFEFQENIDDSNNDLLWGSGAFCFAAVSIRAFQEHGWFTHMRGIKQGDYSQGIIVAPTRNKTRINGKNDRDRCPLNLKVSERKEQELSDCGFIPISPVPETDMVGMTSNVSLHKPKLYEEKHVATNAKLTSMLQYTMCVSRIAHYVKVMGRDKIGGYQDAASLEREFQTWLHQYTTASDEASDELRAKYPLNEAKIKVREKRDTPGHFYSVIHLRPHFQLDQMVSSIKLITELSPEHLV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 504 a.a.    

>T6CP007581 NC_019971:c1059380-1057869 [Vibrio parahaemolyticus BB22OP] [TssC]
MTKIDALNFLDPEELTHEFTPMGLAEFDSHWLTQFVECSDSTLAARIWLEGTQSKDFASFRHSIVSTINTIDTLLQKQLN
EIIHHPDFQKLECSWVGVRYLCEQVDKPSSDSVKIKVLSATWNEVSKDALKAIEFDQSALFKLLYQNEYGMAGGEPFGVV
VGDYQLRYDPRTNYFDRDISVLSKISQSAAAAFSPFVMSASPEIFGVNTFAELSSTRDVAAQFEQIDYVKWRQLRDNDDT
KFIGLTAPNVLFRQPYKSDGSRNDQFEFQENIDDSNNDLLWGSGAFCFAAVSIRAFQEHGWFTHMRGIKQGDYSQGIIVA
PTRNKTRINGKNDRDRCPLNLKVSERKEQELSDCGFIPISPVPETDMVGMTSNVSLHKPKLYEEKHVATNAKLTSMLQYT
MCVSRIAHYVKVMGRDKIGGYQDAASLEREFQTWLHQYTTASDEASDELRAKYPLNEAKIKVREKRDTPGHFYSVIHLRP
HFQLDQMVSSIKLITELSPEHLV*

  Nucleotide sequence: 1512 bp    

>T6CP007581 NC_019971:c1059380-1057869 [Vibrio parahaemolyticus BB22OP] [TssC]
ATGACGAAAATAGATGCATTGAACTTTCTAGACCCAGAGGAACTCACACACGAGTTTACACCGATGGGCCTGGCTGAGTT
TGACAGTCATTGGTTGACTCAATTTGTTGAATGTTCAGATTCAACACTTGCGGCACGAATTTGGTTGGAAGGTACGCAAT
CTAAAGATTTTGCGAGTTTTCGCCATAGCATTGTGAGCACGATTAATACTATTGACACACTATTACAGAAGCAGCTCAAT
GAGATCATTCATCATCCAGATTTTCAGAAATTAGAGTGCAGTTGGGTAGGTGTTCGATATTTATGTGAACAAGTTGATAA
ACCGTCGTCTGACTCAGTAAAAATTAAAGTTCTATCTGCAACATGGAATGAAGTAAGTAAAGATGCGCTCAAGGCTATCG
AATTCGATCAGTCTGCCTTGTTTAAATTACTCTATCAAAATGAATATGGAATGGCCGGAGGAGAACCCTTTGGTGTGGTT
GTTGGTGATTATCAATTACGTTATGACCCGAGAACAAATTATTTTGATAGAGATATCTCTGTGCTAAGCAAGATATCTCA
GTCTGCTGCTGCGGCATTTAGTCCATTTGTAATGTCAGCGTCTCCTGAAATATTCGGTGTGAACACATTTGCCGAACTTT
CGTCGACTCGAGACGTTGCTGCGCAATTTGAACAAATTGATTATGTCAAATGGAGACAGTTGCGAGATAACGATGATACC
AAGTTTATTGGCTTAACCGCTCCTAACGTGCTTTTTCGACAACCCTACAAAAGTGATGGTTCTCGAAACGATCAATTTGA
ATTTCAAGAGAATATTGACGATTCAAATAACGATTTATTGTGGGGAAGTGGAGCCTTCTGTTTCGCTGCTGTTTCGATAA
GAGCATTCCAAGAGCACGGTTGGTTTACTCATATGCGAGGAATAAAGCAGGGGGATTATAGTCAAGGCATTATTGTTGCT
CCTACAAGAAACAAAACGCGCATTAATGGCAAAAATGACAGAGATAGATGCCCTTTAAATCTAAAAGTCTCTGAGCGTAA
AGAGCAAGAACTGTCTGATTGTGGATTCATTCCGATTTCACCAGTTCCTGAAACAGACATGGTTGGCATGACTTCCAATG
TTTCGTTGCATAAGCCAAAACTGTATGAAGAGAAGCATGTTGCGACTAATGCAAAACTCACCTCAATGCTCCAATACACG
ATGTGTGTATCGCGTATAGCACACTACGTCAAAGTTATGGGGCGAGACAAGATAGGTGGTTATCAGGACGCGGCATCGCT
CGAGAGGGAGTTTCAGACTTGGTTACATCAATATACAACGGCTTCAGACGAAGCTTCGGATGAACTCAGAGCTAAGTACC
CATTGAACGAAGCGAAGATCAAAGTTAGAGAGAAACGCGATACGCCAGGGCACTTCTACTCGGTGATACATTTACGTCCT
CATTTTCAGCTCGACCAAATGGTCTCAAGTATCAAATTAATTACGGAATTATCACCAGAACATTTGGTGTAA