Detailed information of component protein


Summary

Component ID T6CP007575
Component protein type TssI
T6SS ID (Type) T6SS00720 experimental (Type i5)
Strain Vibrio parahaemolyticus BB22OP
Replicon chromosome II
Sequence Protein sequence (612 a.a.); Nucleotide sequence (1836 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) VPBB_RS19915
Coordinate (Strand) 1048650..1050485 (-)
NCBI ID WP_015313301.1
RefSeq NC_019971
Uniprot ID UPI0002A58045
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 9.7e-75 30..335
Phage_base_V PF04717.14 1.5e-17 381..461

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-611 MKKASQDNNFIRISSPFGKDALILNLFEYREGISELFSLRAKAYFNDQKNELNEIVGKEVTISVENSSRVSKSPRFFHGIVSAAKLEGQRVMNSHNGENYKNIEIIVEPKVKFAAYRNNCKIFQKKNIKDIISEVLSEHGVAFKFELKNTYPQYSYKVQYEESDLAFVQRLLAEEGLSFCFSHSKSSHVLDIFDDVSFYKPSPEFMVDFDTGSSESSHISAWNETQVLTTKSSQKSGFNMLKPASQPKNVAAGDTALFTVPASEYFEYLGETESDDQYSLRNTHAIESLQQNVYLCSGEASCRTFSVGKCFKFKKHEDKSRVGKEYVLASVTIFASVFNQTGLGGTASQGVRVAFTCVDSKTILRPAVTYPKPQIKGLQTAIVTGNKDGEVYVDKHGRIKVQFHWDRLGKYDVNSSCWIRVAQSVAGNGWGAVFHPRVGQEVIVEFVNGDPDQPIVTGALYNGSQLPPYSLPEKSSQSGFKSRSVQKGNANFNELRFEDKPGEEHIYLHAEKLFQMLVEDCVDIVVENNKVEKVTNDVTQDVGKNAMLKVGENYTSDTGKVLSLNAGKSIEIKVGGASIQMSSSGEINIKGNKISINGSAIALKAGQISLN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9836 - -



  Protein sequence: 612 a.a.    

>T6CP007575 NC_019971:c1050485-1048650 [Vibrio parahaemolyticus BB22OP] [TssI]
MKKASQDNNFIRISSPFGKDALILNLFEYREGISELFSLRAKAYFNDQKNELNEIVGKEVTISVENSSRVSKSPRFFHGI
VSAAKLEGQRVMNSHNGENYKNIEIIVEPKVKFAAYRNNCKIFQKKNIKDIISEVLSEHGVAFKFELKNTYPQYSYKVQY
EESDLAFVQRLLAEEGLSFCFSHSKSSHVLDIFDDVSFYKPSPEFMVDFDTGSSESSHISAWNETQVLTTKSSQKSGFNM
LKPASQPKNVAAGDTALFTVPASEYFEYLGETESDDQYSLRNTHAIESLQQNVYLCSGEASCRTFSVGKCFKFKKHEDKS
RVGKEYVLASVTIFASVFNQTGLGGTASQGVRVAFTCVDSKTILRPAVTYPKPQIKGLQTAIVTGNKDGEVYVDKHGRIK
VQFHWDRLGKYDVNSSCWIRVAQSVAGNGWGAVFHPRVGQEVIVEFVNGDPDQPIVTGALYNGSQLPPYSLPEKSSQSGF
KSRSVQKGNANFNELRFEDKPGEEHIYLHAEKLFQMLVEDCVDIVVENNKVEKVTNDVTQDVGKNAMLKVGENYTSDTGK
VLSLNAGKSIEIKVGGASIQMSSSGEINIKGNKISINGSAIALKAGQISLN*

  Nucleotide sequence: 1836 bp    

>T6CP007575 NC_019971:c1050485-1048650 [Vibrio parahaemolyticus BB22OP] [TssI]
ATGAAAAAAGCAAGTCAAGACAACAACTTTATCCGTATTTCTTCTCCGTTTGGAAAAGATGCTCTTATTCTCAATTTGTT
CGAATATAGAGAAGGGATCTCGGAGCTTTTTTCATTGCGTGCTAAAGCTTATTTTAATGATCAAAAAAATGAGCTCAATG
AAATCGTGGGTAAAGAAGTAACGATTTCAGTAGAAAATAGTAGTCGTGTTTCTAAAAGTCCGCGTTTTTTCCATGGCATT
GTCTCTGCTGCAAAGCTCGAAGGCCAGAGAGTGATGAATTCTCATAATGGAGAAAACTACAAAAATATTGAAATTATTGT
TGAACCGAAAGTTAAGTTCGCAGCGTACAGAAATAATTGTAAGATCTTTCAGAAGAAAAATATAAAAGACATTATTTCCG
AAGTGCTTTCAGAGCATGGTGTTGCATTTAAATTTGAACTAAAAAATACGTATCCCCAATATTCCTACAAAGTTCAGTAT
GAAGAATCTGATCTTGCTTTTGTTCAGCGCCTCCTAGCCGAAGAAGGGCTCTCTTTTTGCTTTAGTCACTCTAAATCATC
CCATGTCCTAGATATTTTTGATGATGTAAGTTTTTACAAACCCAGTCCTGAGTTTATGGTCGATTTCGATACAGGCAGTT
CAGAGTCGAGTCACATTTCTGCTTGGAACGAAACACAAGTTTTAACGACTAAATCAAGCCAGAAGTCTGGCTTCAATATG
CTAAAACCAGCCTCACAACCCAAAAACGTAGCTGCTGGTGATACTGCACTGTTTACCGTACCTGCGAGTGAGTATTTTGA
GTATCTGGGTGAAACAGAAAGTGACGATCAGTACTCGCTTCGAAACACTCACGCAATTGAATCCCTTCAACAGAACGTTT
ATCTATGTAGCGGAGAGGCGAGTTGTCGAACCTTTTCTGTGGGTAAATGTTTTAAGTTCAAAAAACACGAAGATAAATCG
CGAGTAGGAAAAGAATATGTCTTGGCCTCTGTGACGATTTTTGCTTCTGTGTTTAATCAAACTGGTCTGGGTGGCACCGC
TTCTCAAGGTGTTCGTGTTGCGTTTACTTGTGTGGACTCTAAAACCATTTTAAGGCCAGCGGTTACTTACCCTAAACCGC
AAATTAAAGGTCTTCAAACAGCCATTGTGACTGGTAATAAAGACGGTGAGGTATACGTTGATAAACATGGAAGAATAAAA
GTACAGTTCCATTGGGATCGTTTGGGTAAGTACGATGTAAATAGTTCGTGTTGGATTCGAGTTGCTCAAAGTGTTGCCGG
AAATGGATGGGGTGCGGTGTTTCATCCTCGGGTAGGGCAAGAGGTTATCGTAGAGTTTGTGAATGGCGACCCAGATCAAC
CTATTGTCACGGGTGCGCTGTATAACGGGAGCCAGTTGCCCCCGTATTCTCTTCCAGAGAAAAGTTCTCAAAGCGGTTTT
AAGTCCCGCTCAGTTCAAAAAGGAAACGCCAATTTCAACGAGTTACGCTTTGAAGATAAACCTGGCGAAGAACACATTTA
CCTTCACGCAGAAAAGTTGTTCCAAATGTTAGTCGAAGACTGCGTGGATATTGTGGTTGAGAACAATAAAGTTGAGAAAG
TAACCAACGATGTAACTCAAGACGTTGGAAAAAATGCGATGTTAAAGGTGGGAGAGAACTATACCTCTGACACTGGAAAA
GTGTTGTCCCTCAATGCAGGGAAAAGTATTGAAATTAAAGTCGGTGGAGCCTCAATTCAAATGTCGAGTTCTGGCGAAAT
CAACATTAAGGGCAACAAGATTTCTATCAATGGCTCTGCAATCGCATTGAAAGCAGGACAAATCTCTTTGAATTAA