Detailed information of component protein


Summary

Component ID T6CP007574
Component protein type TssL
T6SS ID (Type) T6SS00719 experimental (Type i1)
Strain Vibrio parahaemolyticus BB22OP
Replicon chromosome I
Sequence Protein sequence (264 a.a.); Nucleotide sequence (792 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) VPBB_RS06765
Coordinate (Strand) 1492552..1493343 (+)
NCBI ID WP_005495177.1
RefSeq NC_019955
Uniprot ID A7N4Q7_VIBCB, A0A0A3EKC1_9VIBR
KEGG ID vca:M892_22465, vha:VIBHAR_05851
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 3.8e-51 47..246

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-230 MSYAETDVTVVLFQPEPGKPMEVMPAPDLSRNIAVQDLNIENMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAREIRKGERKLNEMELDRASILVIRYCLCAAIDESVCRQEWGANSHWSQNSLLSEFHNETSGGDKFFVILERLKADPRKYRHVIEFLYLLLQLGFQGKYGREERGNEKLAEIGNTIYRLVRDERLAEQEKVSLVNLKAKYLKKPLKRVISPK
Transmembrane helix 231-253 LILGVSAITFAIMYAATYIVIDL
Outside 254-263 KFQQLLEVYR



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9949 - -



  Protein sequence: 264 a.a.    

>T6CP007574 NC_019955:1492552-1493343 [Vibrio parahaemolyticus BB22OP] [TssL]
MSYAETDVTVVLFQPEPGKPMEVMPAPDLSRNIAVQDLNIENMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAR
EIRKGERKLNEMELDRASILVIRYCLCAAIDESVCRQEWGANSHWSQNSLLSEFHNETSGGDKFFVILERLKADPRKYRH
VIEFLYLLLQLGFQGKYGREERGNEKLAEIGNTIYRLVRDERLAEQEKVSLVNLKAKYLKKPLKRVISPKLILGVSAITF
AIMYAATYIVIDLKFQQLLEVYR*

  Nucleotide sequence: 792 bp    

>T6CP007574 NC_019955:1492552-1493343 [Vibrio parahaemolyticus BB22OP] [TssL]
ATGAGTTACGCAGAAACTGACGTTACTGTAGTCTTATTCCAACCAGAGCCAGGCAAACCGATGGAGGTGATGCCAGCGCC
TGACTTGTCTCGTAATATTGCGGTACAAGACCTAAACATTGAAAACATGGGCATCAACCCGTTGGTCGACCAGTTCTCAT
GGTTGATTGCCAGCTTATCTTGTATGTCTTCGATTCCTTGGCTTGATGACCCAATGCCGTTTCGTGAACAAGTAGCTCGT
GAGATAAGAAAAGGCGAGCGTAAGCTCAATGAAATGGAACTGGATCGCGCATCCATTTTGGTCATCCGCTACTGTTTGTG
TGCTGCGATTGATGAGTCGGTCTGCCGACAAGAGTGGGGCGCTAACAGCCATTGGAGCCAGAACAGTTTGCTGTCAGAGT
TCCACAACGAAACATCCGGCGGCGATAAGTTTTTCGTCATTCTTGAGCGATTAAAAGCAGACCCGCGCAAATACCGTCAC
GTTATCGAGTTTCTGTATTTGTTGCTTCAACTTGGCTTTCAGGGCAAATATGGCCGTGAAGAGCGCGGTAACGAAAAGCT
AGCAGAAATCGGCAATACAATTTATCGCTTAGTACGTGATGAACGCTTAGCAGAGCAAGAGAAAGTCTCTCTCGTTAACC
TTAAGGCCAAATACCTTAAGAAGCCGTTAAAAAGGGTGATTTCACCCAAACTGATTTTAGGCGTCAGTGCGATTACCTTC
GCAATCATGTATGCCGCGACTTACATCGTCATAGATTTAAAGTTTCAGCAATTACTTGAAGTGTATCGATAA