SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP007574
Component protein type	TssL
T6SS ID (Type)	T6SS00719 (Type i1)
Strain	Vibrio parahaemolyticus BB22OP
Replicon	chromosome I
Sequence	Protein sequence (264 a.a.); Nucleotide sequence (792 bp)
Reference	[1] Gode-Potratz CJ, McCarter LL. Quorum sensing and silencing in Vibrio parahaemolyticus. J Bacteriol. 2011 Aug;193(16):4224-37. doi: 10.1128/JB.00432-11. Epub 2011 Jun 24. PMID: 21705592 [2] Fridman CM, Keppel K, Gerlic M, et al. A comparative genomics methodology reveals a widespread family of membrane-disrupting T6SS effectors. Nat Commun. 2020 Feb 27;11(1):1085. doi: 10.1038/s41467-020-14951-4. PMID: 32109231

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	VPBB_RS06765
Coordinate (Strand)	1492552..1493343 (+)
NCBI ID	WP_005495177.1
RefSeq	NC_019955
Uniprot ID	A7N4Q7_VIBCB, A0A0A3EKC1_9VIBR
KEGG ID	vca:M892_22465, vha:VIBHAR_05851
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
DotU	PF09850.11	3.8e-51	47..246

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Inside	1-230	MSYAETDVTVVLFQPEPGKPMEVMPAPDLSRNIAVQDLNIENMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAREIRKGERKLNEMELDRASILVIRYCLCAAIDESVCRQEWGANSHWSQNSLLSEFHNETSGGDKFFVILERLKADPRKYRHVIEFLYLLLQLGFQGKYGREERGNEKLAEIGNTIYRLVRDERLAEQEKVSLVNLKAKYLKKPLKRVISPK
Transmembrane helix	231-253	LILGVSAITFAIMYAATYIVIDL
Outside	254-263	KFQQLLEVYR

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9949	-	-

Protein sequence: 264 a.a.

						>T6CP007574 NC_019955:1492552-1493343 [Vibrio parahaemolyticus BB22OP] [TssL]
MSYAETDVTVVLFQPEPGKPMEVMPAPDLSRNIAVQDLNIENMGINPLVDQFSWLIASLSCMSSIPWLDDPMPFREQVAR
EIRKGERKLNEMELDRASILVIRYCLCAAIDESVCRQEWGANSHWSQNSLLSEFHNETSGGDKFFVILERLKADPRKYRH
VIEFLYLLLQLGFQGKYGREERGNEKLAEIGNTIYRLVRDERLAEQEKVSLVNLKAKYLKKPLKRVISPKLILGVSAITF
AIMYAATYIVIDLKFQQLLEVYR*					

Nucleotide sequence: 792 bp

						>T6CP007574 NC_019955:1492552-1493343 [Vibrio parahaemolyticus BB22OP] [TssL]
ATGAGTTACGCAGAAACTGACGTTACTGTAGTCTTATTCCAACCAGAGCCAGGCAAACCGATGGAGGTGATGCCAGCGCC
TGACTTGTCTCGTAATATTGCGGTACAAGACCTAAACATTGAAAACATGGGCATCAACCCGTTGGTCGACCAGTTCTCAT
GGTTGATTGCCAGCTTATCTTGTATGTCTTCGATTCCTTGGCTTGATGACCCAATGCCGTTTCGTGAACAAGTAGCTCGT
GAGATAAGAAAAGGCGAGCGTAAGCTCAATGAAATGGAACTGGATCGCGCATCCATTTTGGTCATCCGCTACTGTTTGTG
TGCTGCGATTGATGAGTCGGTCTGCCGACAAGAGTGGGGCGCTAACAGCCATTGGAGCCAGAACAGTTTGCTGTCAGAGT
TCCACAACGAAACATCCGGCGGCGATAAGTTTTTCGTCATTCTTGAGCGATTAAAAGCAGACCCGCGCAAATACCGTCAC
GTTATCGAGTTTCTGTATTTGTTGCTTCAACTTGGCTTTCAGGGCAAATATGGCCGTGAAGAGCGCGGTAACGAAAAGCT
AGCAGAAATCGGCAATACAATTTATCGCTTAGTACGTGATGAACGCTTAGCAGAGCAAGAGAAAGTCTCTCTCGTTAACC
TTAAGGCCAAATACCTTAAGAAGCCGTTAAAAAGGGTGATTTCACCCAAACTGATTTTAGGCGTCAGTGCGATTACCTTC
GCAATCATGTATGCCGCGACTTACATCGTCATAGATTTAAAGTTTCAGCAATTACTTGAAGTGTATCGATAA					