Detailed information of component protein


Summary

Component ID T6CP007573
Component protein type TssK
T6SS ID (Type) T6SS00719 experimental (Type i1)
Strain Vibrio parahaemolyticus BB22OP
Replicon chromosome I
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPBB_RS06760
Coordinate (Strand) 1491230..1492555 (+)
NCBI ID WP_015296678.1
RefSeq NC_019955
Uniprot ID UPI0002A55AA1
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 6.5e-137 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MSLYNPVVWQDGMFMKPQHFQQLDRSQSKLSSMLSANASPLHWGIKRLEINSQLLALGKIGITRAEGILQDRTPFELPLLAELPEVKDVDPSIADKVVYLCCPLPSERSELFGTKKDGARYTLESQEAVDACYDSEDMANIVVGKLNFCLMYDHEDKSAYTSIPILKISEVKPDGSVILDESFIPTCIDIHASTVLNKFATEFASMLKHRAESIVQRLGVVDQQGVSSVSDFMLLQALNRYEPLFWHFASAEGVHPESFYRILLQAEGELSTLCSASRRPIEFTKYNHGDLTSCLSRTLDSAKMTLSVMSEQRAIPLTLKDQNYGIRTAAIPDSKIIDTTTFILAVKADVTLDVLHTQFVSQTKIGSIDNIRDLINLQLPGIEIKPMPVVPRALPYHAGYTYFELDKTGEEWAAMKNTAAIAVHVAGDFANLSLQLWAVRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9889 - -


  Protein sequence: 442 a.a.    

>T6CP007573 NC_019955:1491230-1492555 [Vibrio parahaemolyticus BB22OP] [TssK]
MSLYNPVVWQDGMFMKPQHFQQLDRSQSKLSSMLSANASPLHWGIKRLEINSQLLALGKIGITRAEGILQDRTPFELPLL
AELPEVKDVDPSIADKVVYLCCPLPSERSELFGTKKDGARYTLESQEAVDACYDSEDMANIVVGKLNFCLMYDHEDKSAY
TSIPILKISEVKPDGSVILDESFIPTCIDIHASTVLNKFATEFASMLKHRAESIVQRLGVVDQQGVSSVSDFMLLQALNR
YEPLFWHFASAEGVHPESFYRILLQAEGELSTLCSASRRPIEFTKYNHGDLTSCLSRTLDSAKMTLSVMSEQRAIPLTLK
DQNYGIRTAAIPDSKIIDTTTFILAVKADVTLDVLHTQFVSQTKIGSIDNIRDLINLQLPGIEIKPMPVVPRALPYHAGY
TYFELDKTGEEWAAMKNTAAIAVHVAGDFANLSLQLWAVRL*

  Nucleotide sequence: 1326 bp    

>T6CP007573 NC_019955:1491230-1492555 [Vibrio parahaemolyticus BB22OP] [TssK]
ATGTCTTTATACAATCCAGTTGTTTGGCAAGATGGAATGTTCATGAAGCCGCAGCACTTTCAGCAACTCGATCGTTCACA
AAGTAAACTGTCGAGCATGCTGAGCGCAAATGCATCACCTTTGCATTGGGGCATTAAGCGCTTAGAGATTAACTCGCAAC
TATTGGCGTTGGGCAAAATTGGTATCACTCGTGCTGAAGGTATTCTTCAAGACAGAACACCATTTGAGCTGCCGCTGCTG
GCTGAACTTCCAGAAGTGAAAGACGTTGATCCTTCGATCGCTGACAAAGTGGTTTACCTTTGTTGTCCGTTACCTTCTGA
GCGCTCTGAACTATTCGGCACCAAGAAAGACGGCGCACGTTACACGCTGGAATCTCAAGAGGCGGTTGACGCTTGTTATG
ATTCAGAAGACATGGCAAATATCGTAGTCGGTAAGCTTAACTTCTGCTTGATGTATGACCATGAAGATAAGAGTGCTTAC
ACATCAATTCCAATTCTGAAGATCTCAGAAGTGAAGCCAGACGGCAGTGTTATCTTGGATGAAAGCTTTATCCCGACTTG
TATCGATATTCATGCCTCTACCGTGCTAAACAAGTTCGCAACCGAGTTTGCCTCTATGCTGAAACACCGCGCAGAATCCA
TCGTTCAGCGCCTCGGCGTGGTTGACCAGCAAGGAGTATCTTCAGTTTCTGATTTCATGTTGCTGCAAGCTCTAAACCGA
TACGAGCCGCTATTCTGGCACTTTGCGAGCGCAGAAGGGGTTCATCCTGAATCGTTTTATCGCATTCTTCTTCAAGCGGA
AGGTGAGCTTTCGACTTTGTGTTCAGCATCTCGTCGACCAATCGAGTTCACCAAGTACAACCATGGCGACCTAACCAGCT
GTCTATCGCGTACATTGGATAGTGCGAAGATGACACTAAGTGTGATGTCTGAGCAGCGTGCAATCCCACTGACGTTGAAA
GACCAAAACTACGGTATTAGAACGGCAGCGATTCCAGACAGTAAGATTATCGACACCACGACCTTTATTCTTGCGGTTAA
AGCCGACGTTACTTTGGATGTTCTTCACACCCAGTTTGTTAGTCAAACGAAGATCGGTTCTATCGATAACATTCGTGACT
TGATTAACCTGCAACTGCCGGGCATCGAGATTAAACCAATGCCAGTCGTACCTCGCGCATTGCCTTACCACGCAGGTTAC
ACCTACTTCGAACTGGATAAGACAGGCGAAGAGTGGGCAGCAATGAAAAACACGGCTGCAATTGCGGTTCACGTAGCCGG
CGACTTTGCTAACTTGTCGCTGCAACTATGGGCAGTTCGTCTATGA