Detailed information of component protein


Summary

Component ID T6CP007565
Component protein type TssH
T6SS ID (Type) T6SS00719 experimental (Type i1)
Strain Vibrio parahaemolyticus BB22OP
Replicon chromosome I
Sequence Protein sequence (891 a.a.); Nucleotide sequence (2673 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPBB_RS06660
Coordinate (Strand) 1464178..1466850 (-)
NCBI ID WP_015296665.1
RefSeq NC_019955
Uniprot ID UPI0002A57934
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 7.8e-44 624..788
AAA_lid_9 PF17871.3 6.1e-31 357..452
ClpB_D2-small PF10431.11 1.8e-13 795..869
AAA PF00004.31 7.4e-10 220..348
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-890 MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNAKGNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQHGYASILEAVNPDSLKRNFAELTSHSIEAQVATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQGDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQLPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMEATKEELAEQEVQWHKENEQIQEMIALRSRLHELVFGKVNEEELVVDEDSEQDVSPYTEMDEEAVRIAISACQEQLDAIRNGNPLVHFEVGPDEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSDEAMTEIIHHKLNKVSQRLHSHHKLSLNYEESLVNFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQITVSVDEQGTLTYAFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9911 - -


  Protein sequence: 891 a.a.    

>T6CP007565 NC_019955:c1466850-1464178 [Vibrio parahaemolyticus BB22OP] [TssH]
MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDFDVLLSHFDCSENLLRQSVRSTLDTNAK
GNGSKPVFSALLIEWLQESWLVSSLDLSETQIRSGALLLTLVSNPLRYGQHGYASILEAVNPDSLKRNFAELTSHSIEAQ
VATSEKTQAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQ
GDVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALAR
GEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQ
LPDKAIDVLDTACARVNISLNAIPASVETLQQELAAQQRELEALERDALQQTGDKHSLANIPDLKLAMEATKEELAEQEV
QWHKENEQIQEMIALRSRLHELVFGKVNEEELVVDEDSEQDVSPYTEMDEEAVRIAISACQEQLDAIRNGNPLVHFEVGP
DEVSHVISDWTGIPMGKMLQDEAETTLKLKESLTQSIKGQEYAIDALSEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTE
TARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQV
FDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIESLVHQSKDIDANIIAEAIRPTLNQHFKPALLARMSVLPFVPLSDEAM
TEIIHHKLNKVSQRLHSHHKLSLNYEESLVNFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDSHTQITVSVD
EQGTLTYAFS*

  Nucleotide sequence: 2673 bp    

>T6CP007565 NC_019955:c1466850-1464178 [Vibrio parahaemolyticus BB22OP] [TssH]
ATGATAAATATAAACCTTTCTTCATTAATTCAGCGTCTACACCCGATAGCTAAAGTAGCATTAGAAGATGCCGCAGCACT
CGCAGTCTCGGAAAAAGCAAACGAAGTTCAAATTGAGCATTATTTACTGAGTCTATTAGAAAGGCCAAATAGTGATTTTG
ACGTCTTATTAAGTCATTTTGATTGTTCTGAGAACTTATTGAGACAATCGGTTCGATCCACACTCGATACCAACGCCAAA
GGAAATGGCAGCAAACCTGTTTTTTCTGCTTTATTAATCGAATGGTTACAAGAAAGCTGGCTGGTTTCTTCTTTAGATCT
ATCCGAAACACAAATCCGCTCTGGCGCCCTACTCCTTACTCTTGTTAGCAACCCTCTGCGTTATGGCCAACATGGTTACG
CCTCTATTCTTGAAGCAGTAAACCCTGATAGCCTTAAACGTAACTTTGCAGAACTAACAAGCCACTCTATTGAGGCGCAA
GTCGCGACTTCAGAGAAAACACAAGCTCGTGAAGATGGTTCAGCACTGAGCAAGTTCACGACAGACTTCACCGGTAAAGC
ACGCAAAGGCGAAATCGATCCTGTTTTCTGCCGTGACCAAGAAATCCGCCAAATTGTAGACATTCTTGCTCGTCGCCGTA
AAAACAATCCTATTGCCGTTGGTGAGCCGGGCGTTGGTAAAACCGCAGTTGTTGAAGGCTTGGCGCTTAAGATCGTGCAA
GGAGACGTACCAGACAATCTAAAAGGCGTAGAGCTTTACGGCCTAGATATGGGTCTTCTGCAAGCGGGCGCTAGCGTAAA
AGGTGAATTTGAAAAACGCCTAAACGCAGTATTGGATGAAGTGAAAAACTCGCCAACACCGATCATCTTATTCATCGATG
AAGCGCACACCCTTGTTGGCGGCGGCAACCAAGCGGGCGGTAGCGATGCTGCTAACTTATTAAAACCTGCCCTAGCACGT
GGTGAAGTAAAGACAATCGCAGCAACAACATGGTCGGAATACAAAAAGTACTTTGAGAAAGATCCTGCTCTTGCGCGTCG
TTTCCAATTGGTGAAACTCGACGAACCATCTCCTGAGCAAGCAGCATTGATCATTCGTGGTCTGCGCCCTGCATACGAGA
AGTCTCACAACGTTTACGTGCGTGATGACGCCATCACTGCTGCGGCAGCGCTTTCTGCGCGTTACATCTCTGGTCGTCAA
CTACCAGACAAAGCGATCGATGTACTAGATACGGCGTGTGCACGAGTGAACATCAGCCTTAATGCCATTCCTGCTTCTGT
TGAGACTCTTCAGCAAGAACTTGCAGCTCAACAGCGCGAGCTTGAAGCGCTTGAGCGTGATGCTCTGCAGCAAACTGGCG
ACAAGCACAGCCTTGCTAACATTCCAGACCTAAAACTGGCAATGGAAGCGACAAAAGAAGAGCTAGCAGAACAAGAAGTG
CAATGGCACAAAGAAAACGAGCAGATCCAAGAGATGATTGCTCTACGCTCTCGCTTACATGAACTGGTCTTTGGCAAAGT
AAATGAAGAAGAGCTTGTTGTAGACGAAGATTCAGAACAAGACGTTTCTCCATATACAGAAATGGATGAAGAAGCGGTCC
GCATTGCGATTTCAGCATGCCAAGAACAGTTAGACGCAATCCGCAATGGCAACCCATTAGTTCACTTTGAAGTTGGGCCA
GATGAAGTCAGCCACGTTATCTCAGACTGGACTGGCATTCCAATGGGTAAGATGCTTCAAGACGAAGCAGAGACCACGCT
AAAACTGAAAGAGAGCCTAACACAAAGCATCAAAGGCCAAGAATACGCTATCGATGCACTGTCTGAAGGCATTCAAACCG
CAAAAGCTGGCTTGGGTAATCCAGACGCACCAACAGGCGTATTCCTGCTAGTTGGTCCAAGTGGTGTGGGTAAAACCGAG
ACAGCTCGTGCGATCGCTGATCAAATGTTTGGTGGTGAGCGCTTTATGACGACCATTAACATGTCTGAGTTCCAAGAGAA
GCACACGGTATCTCGCCTAATCGGTTCGCCTCCGGGTTACGTAGGTTACGGTGAAGGCGGCATGCTGACAGAGGCGGTAC
GTCAGCGTCCATATTCTGTTGTACTTCTCGATGAAGTAGAAAAAGCCGATCCAGAAGTGTTGAACCTGTTCTACCAAGTG
TTCGACAAAGGTACGCTGAACGACGGTGAAGGTCGTACTATTGACTTCAAGAACACGCTGATCATCATGACCAGCAACCT
TGCGACGCACGAAATTGAATCTCTGGTTCACCAGTCTAAAGACATTGATGCTAACATCATCGCAGAAGCCATCCGCCCTA
CTTTGAACCAACACTTCAAGCCGGCGCTGTTGGCACGTATGTCCGTACTTCCGTTTGTGCCTCTGTCTGACGAAGCAATG
ACAGAAATTATCCACCACAAACTAAACAAAGTTTCTCAGCGCCTACATAGCCATCACAAGTTGTCTCTGAACTACGAAGA
AAGCTTGGTCAATTTCGTACTAGGTAACTGTCGCCTTGCTGAAACAGGCGCACGTAACATTGACGCGGTCATCAACCGTC
AGTTACTGCCTCAGCTATCGACACAGCTATTGGTGCATGATAAGGATGATTCACACACGCAAATCACAGTTTCTGTCGAT
GAGCAAGGAACACTGACCTATGCGTTCAGCTAA