Detailed information of component protein


Summary

Component ID T6CP006462
Component protein type TssA
T6SS ID (Type) T6SS00612 insolico (Type i4a)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (367 a.a.); Nucleotide sequence (1101 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS13790
Coordinate (Strand) 2985302..2986402 (+)
NCBI ID WP_014602903.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 3.6e-37 16..138
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 367 a.a.    

>T6CP006462 NC_017548:2985302-2986402 [Pseudomonas aeruginosa M18] [TssA]
MTLPLSGNALSLEVLLEPIDPGQPCGPSLRYDPDYDRLRELRREDDSSLPTGVWQAEAKRADWAAVEQLASDLLQRRSKD
LMLAAWLGEAWLQRGGLGGLQRALVLLAELCERYPEEVHPQAQDGDQSWRVPPIDWLLRRYAELLHTRLPLMGQGAFAEI
TLYAWQRLQRQQVASGDSKSAKAALEAAQLQQKKLDEALRAEPLVQWQRKQASLLACQQQLLRLEQWCDRCLGELAPSCQ
PLREVIAQWLALLKEFIAMHPQAPLSEEQPPVAEADASEGDADGEESVPASAPSGPAGAPTSREDAYRQLLLIADYLART
EPHSPVPYLIKRAVEWGNKPLSELLAELINADSEARRVWSLLGVLP*

  Nucleotide sequence: 1101 bp    

>T6CP006462 NC_017548:2985302-2986402 [Pseudomonas aeruginosa M18] [TssA]
ATGACCCTGCCTCTTTCCGGCAACGCCCTGTCCCTGGAAGTGCTGCTCGAACCGATCGACCCCGGACAGCCGTGCGGCCC
CAGCCTGCGCTACGACCCGGACTACGACCGCCTGCGCGAGTTGCGCCGGGAGGATGACAGCAGCCTGCCGACCGGCGTCT
GGCAGGCGGAGGCCAAGCGCGCCGACTGGGCCGCGGTGGAGCAGTTGGCCAGCGATCTGTTGCAGCGGCGCAGCAAGGAC
CTGATGCTCGCCGCCTGGCTCGGCGAGGCCTGGCTGCAACGCGGCGGGCTGGGCGGATTGCAGCGCGCGCTGGTGCTGCT
GGCGGAACTCTGCGAGCGCTACCCCGAGGAGGTGCATCCGCAAGCCCAGGACGGCGACCAGTCGTGGCGGGTGCCGCCCA
TCGACTGGCTGTTGCGCCGCTATGCCGAGCTGCTGCACACGCGCCTGCCGCTGATGGGGCAGGGCGCGTTCGCCGAGATC
ACCCTCTATGCCTGGCAGAGGTTGCAGCGCCAGCAGGTCGCCAGCGGCGACAGCAAGAGCGCCAAGGCGGCGCTGGAAGC
GGCGCAACTTCAGCAGAAGAAGCTAGACGAAGCGTTGCGCGCGGAGCCCCTGGTGCAATGGCAGCGCAAGCAGGCCAGCC
TGCTCGCCTGCCAGCAGCAACTACTGCGCCTGGAACAGTGGTGCGACCGCTGCCTGGGCGAACTCGCCCCCAGTTGCCAG
CCATTGCGCGAGGTCATCGCGCAATGGCTGGCCTTGCTCAAGGAGTTCATCGCCATGCACCCGCAAGCGCCGCTGTCCGA
AGAACAGCCCCCGGTCGCGGAGGCGGATGCCAGCGAAGGCGACGCGGACGGCGAGGAAAGCGTCCCGGCGAGCGCGCCGA
GCGGGCCGGCTGGCGCGCCGACCAGTCGCGAGGACGCCTACCGGCAATTGCTGCTGATCGCTGACTACCTGGCGCGCACC
GAGCCGCACAGCCCGGTTCCCTACCTGATCAAGCGCGCGGTGGAGTGGGGCAACAAGCCGCTGAGCGAGTTGCTGGCGGA
GCTGATCAATGCGGACTCGGAGGCGCGCCGAGTCTGGTCGCTGCTTGGCGTACTGCCCTAA