Detailed information of component protein


Summary

Component ID T6CP006461
Component protein type TssM
T6SS ID (Type) T6SS00612 insolico (Type i4a)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (1272 a.a.); Nucleotide sequence (3816 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS13785
Coordinate (Strand) 2981490..2985305 (+)
NCBI ID WP_014602902.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 2.9e-48 115..352
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1272 a.a.    

>T6CP006461 NC_017548:2981490-2985305 [Pseudomonas aeruginosa M18] [TssM]
MSGATLFMLVLLLVLLALLLGALGWWWRTRGGTEIRSFYAAVRQMEREQGWQGRYEAPWLLMLGNETEGEQLCSTWRLLP
VARPAWFGRWWSDGEGAILLVPESVFLPDEGLRRQSGAWLRLLRLFLRLRGRRALDGVVWNIPMARLQDGEQAANLGLAA
RRRYVELTQRLGLSLPVYVVITGLEDLPGFQELLAALPEEARERALGWSSPFAAEAAWQSRWCEQALEEITATLTESIVE
LGTLRGQVDNELYCLPPRLESLRGSLQALLEPVFQGNARGEAPRFRGLYLSGSEAAGAAADEVLPAVDAPRRRSSFASQL
WARRILAEEGLAQAVPRILQLRQRWQRGIGLAALCLCLLWGGLMTWVWRDALRDAGELSQLLHGASERYQPLDDDTRRAA
QVRQNVQAWWQLVSQAPRWRFTSLAFPSSWFSSLDARIDNAYRRVSERLLVRPLRSLLEGEASDLRAIRSDGQPGLKEGD
DPSQWKDYLAAKDLVARATTLERHNRLFAQAIDNRRTPLDDLLQLSNDALGSSYNAGSLARLAYYNRTLFAERPADLAAL
DLGRVAATAADNFHDLMARWLNAYFLTDSLERTGNALTQELAQLGQERDATAAQLLGIGELINHLQQQVNRINLIWGNGV
GQDLVPGYQNLLKSAQQSSLLGNRVEELQNLTVQLQQQFRSEWIAPPEAAGDGLLVKQGATLKLADDLLGLKRAIDDLKT
KDFVSVALADKTLADHSLLSIDDIGVTQALSFFNDFTGYYESTLPSLNPRYRYSVLHAAASAATEAMWQSLGPRSRSLAS
RNASRFDVQVKQVQVLQAALLELQDLQAGARLLLSLNALAVADIGQALRDIDEQAVLREPVDFSRWSGAPNFGLQMFRAQ
DSAELKQSLNSQFNAMAAVAERHAPALEWLQAQQSSLATADYNAFVRFSALNAELQKFKADNPASTAAQLAKLVGNDFNQ
MDIGSCADILNGVLLPSSRSDLATRLVDLRQGALGRCQSLQQQQAAQAWKDLADYFNQYLAGRFPFAYSLEAADAEPGRV
RHLLKLMETRLPQVREGLAQVRSPDLPAAEDFVRRLEQAQRWLGPLFERDKSGLLGVALDIDWRSDRSLERGADQVIAWS
LYSGDQESRFPGAQDKGLTWNVGDPLKIMLRWAKNGSQRPADDPRQASLAVADLEAGWSYQGSWALLRMMRAHFSRQRPP
NVDYTEFPLVLQLPVYAPYSPENEARMFLRLSLMSLGGKTPLSIQPLPVRAPQSPFATLLPATVASTGGTP*

  Nucleotide sequence: 3816 bp    

>T6CP006461 NC_017548:2981490-2985305 [Pseudomonas aeruginosa M18] [TssM]
ATGAGCGGCGCGACCCTGTTCATGCTGGTTCTCCTCCTGGTGCTGCTGGCGCTGCTGCTGGGGGCGCTGGGCTGGTGGTG
GCGGACCCGGGGCGGTACGGAGATCCGCAGCTTCTACGCGGCGGTCCGGCAGATGGAGCGCGAGCAGGGCTGGCAGGGCC
GCTACGAAGCGCCCTGGCTGCTGATGCTCGGCAACGAGACCGAGGGCGAGCAGTTGTGCTCCACCTGGCGTCTGCTGCCG
GTGGCGCGCCCGGCCTGGTTCGGCCGCTGGTGGTCGGACGGCGAGGGGGCGATCCTGCTGGTGCCCGAGTCGGTGTTCCT
GCCCGACGAGGGCCTGCGCCGGCAAAGCGGCGCCTGGCTGCGCCTGTTGCGTCTGTTCCTGCGCCTGCGTGGCAGGCGCG
CGCTGGACGGAGTGGTCTGGAACATTCCGATGGCGCGGTTGCAGGATGGCGAGCAGGCGGCCAACCTCGGCCTCGCCGCG
CGCCGTCGCTACGTGGAACTGACCCAGCGCCTTGGCCTGAGCCTGCCGGTTTACGTGGTGATCACTGGCCTGGAAGACCT
GCCGGGTTTCCAGGAACTTCTCGCGGCGCTGCCCGAGGAGGCGCGCGAGCGCGCCCTCGGCTGGTCCTCGCCGTTCGCCG
CCGAAGCGGCCTGGCAGTCGCGCTGGTGCGAGCAGGCGCTGGAGGAAATCACCGCCACCCTGACCGAGTCGATCGTCGAA
CTCGGTACCTTGCGCGGCCAGGTGGACAATGAGCTGTATTGCCTGCCGCCACGCCTGGAAAGCCTCCGCGGTTCGTTGCA
GGCGCTGCTCGAACCGGTCTTCCAGGGCAACGCCAGGGGCGAGGCGCCGCGCTTTCGCGGTCTCTACCTGAGCGGCAGCG
AGGCGGCGGGCGCGGCAGCCGACGAAGTCCTGCCGGCGGTCGACGCGCCGCGTCGGCGCAGCAGCTTCGCCAGCCAACTG
TGGGCACGGCGGATCCTTGCCGAGGAAGGCCTGGCCCAGGCGGTGCCGCGCATCCTCCAGCTGCGTCAGCGCTGGCAGCG
CGGGATCGGCCTCGCCGCGTTGTGCCTGTGCCTGCTCTGGGGCGGCCTGATGACCTGGGTCTGGCGCGACGCGCTGCGCG
ACGCCGGTGAACTGTCGCAACTGCTGCATGGCGCCAGTGAGCGCTACCAGCCGCTCGACGACGACACTCGGCGCGCCGCC
CAGGTCCGGCAGAACGTCCAGGCCTGGTGGCAACTGGTGTCACAGGCGCCGCGCTGGCGCTTCACTTCGCTGGCGTTTCC
CAGTTCCTGGTTTTCCTCCCTGGATGCACGTATCGACAACGCGTATCGCCGCGTTTCCGAGCGCCTGCTGGTGCGACCGC
TGCGCAGCCTGCTGGAAGGCGAGGCGAGCGACCTGCGGGCGATCCGCAGCGATGGCCAACCCGGCCTGAAGGAGGGCGAC
GACCCCAGCCAGTGGAAGGACTACCTGGCGGCGAAGGACCTGGTCGCCCGCGCCACTACGCTGGAGCGCCACAATCGCTT
GTTCGCCCAGGCCATCGACAACCGCAGGACGCCGCTCGACGACCTTCTGCAACTGAGTAACGATGCCTTGGGCAGCAGCT
ACAACGCCGGCAGCCTGGCGCGCCTGGCCTATTACAACCGCACGCTGTTCGCCGAGCGTCCGGCCGATCTCGCCGCCCTC
GACCTGGGCCGGGTCGCCGCCACGGCGGCGGATAACTTCCATGACCTGATGGCACGCTGGCTGAACGCCTACTTCCTCAC
CGACAGCCTGGAACGCACCGGCAATGCCCTGACCCAGGAACTCGCGCAGCTCGGCCAGGAACGAGACGCCACGGCGGCCC
AGTTGCTGGGGATCGGCGAATTGATCAACCACCTGCAGCAACAGGTCAACCGCATCAACCTGATCTGGGGCAATGGCGTC
GGCCAGGATCTCGTCCCTGGCTACCAGAACCTGCTCAAGAGCGCCCAGCAAAGCAGCTTGCTGGGAAACCGCGTGGAGGA
ACTGCAGAACCTCACCGTGCAGTTGCAGCAGCAGTTTCGCAGCGAATGGATCGCGCCTCCGGAGGCTGCCGGCGACGGCC
TGCTGGTGAAACAGGGGGCGACGCTCAAGCTGGCCGATGACCTGCTCGGTCTGAAACGCGCCATCGATGACCTGAAGACC
AAGGACTTCGTCTCCGTGGCCCTGGCGGACAAGACACTGGCGGACCACTCCTTGCTGAGCATCGACGATATCGGCGTGAC
TCAGGCGTTGAGCTTCTTCAACGACTTCACCGGCTACTACGAGAGCACCCTGCCATCGCTCAACCCGCGCTATCGCTATT
CGGTCCTGCACGCCGCCGCCAGCGCGGCGACCGAGGCCATGTGGCAAAGCCTCGGGCCGCGCAGTCGTAGCCTGGCCAGT
CGCAATGCCTCGCGTTTCGACGTGCAGGTCAAGCAGGTCCAGGTGTTGCAGGCGGCGCTGCTGGAGTTGCAGGACCTGCA
GGCCGGCGCGCGCCTGCTGCTCAGCCTCAACGCGCTGGCCGTGGCCGATATCGGCCAGGCCCTGCGCGACATCGACGAGC
AGGCGGTGCTGCGCGAGCCGGTCGATTTCAGCCGCTGGTCGGGCGCGCCGAATTTCGGCCTGCAGATGTTCCGCGCCCAG
GACAGTGCCGAGCTGAAGCAAAGCCTGAACAGCCAGTTCAATGCCATGGCGGCCGTCGCCGAACGCCACGCCCCGGCGCT
GGAGTGGTTGCAGGCGCAGCAATCCAGCCTGGCCACCGCCGACTACAACGCGTTCGTGCGCTTCAGCGCGCTCAACGCCG
AACTGCAGAAATTCAAGGCCGACAACCCGGCGAGCACCGCGGCGCAGTTGGCGAAGCTGGTGGGTAACGATTTCAACCAG
ATGGACATCGGCAGTTGCGCCGACATTCTCAACGGCGTGCTCCTGCCGTCCAGCCGCAGCGACCTGGCGACGCGCCTGGT
GGACCTGCGCCAGGGCGCGCTCGGGCGCTGCCAGTCGTTGCAACAGCAGCAGGCGGCGCAGGCCTGGAAGGACCTCGCCG
ACTACTTCAACCAGTACCTCGCCGGACGCTTCCCGTTCGCCTACAGCCTGGAAGCGGCCGATGCCGAGCCGGGGCGGGTG
CGGCACCTGCTGAAACTGATGGAGACGCGCTTGCCGCAGGTGCGCGAAGGGCTGGCCCAGGTTCGCTCGCCGGACCTGCC
GGCCGCCGAGGACTTCGTCCGCCGCCTGGAGCAGGCGCAGCGCTGGCTCGGCCCGCTGTTCGAGCGCGACAAGTCGGGCC
TGCTCGGCGTCGCCCTGGACATCGACTGGCGCAGCGACCGCAGCCTGGAACGCGGCGCCGACCAGGTGATCGCCTGGAGC
CTGTACTCGGGCGACCAGGAAAGCCGTTTCCCCGGCGCGCAGGACAAGGGCCTGACCTGGAATGTCGGCGATCCGCTGAA
AATCATGCTGCGCTGGGCGAAGAACGGCTCGCAGCGTCCGGCAGACGACCCGCGCCAGGCCAGCCTGGCGGTGGCCGACC
TCGAGGCCGGCTGGAGCTACCAGGGCTCCTGGGCGCTGTTGCGCATGATGCGCGCGCACTTCTCCCGGCAGCGCCCGCCG
AACGTCGACTACACGGAGTTTCCGCTGGTCCTGCAACTGCCGGTGTATGCGCCCTACAGCCCGGAAAACGAGGCGCGGAT
GTTCCTCCGCCTGTCGTTGATGAGCCTGGGCGGCAAGACCCCGCTGTCCATCCAGCCGCTGCCGGTGCGCGCGCCGCAAT
CGCCGTTCGCGACGCTGTTGCCGGCCACCGTCGCCAGCACGGGAGGTACCCCATGA