Detailed information of component protein
Summary
| Component ID | T6CP006459 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00612  (Type i4a) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (182 a.a.); Nucleotide sequence (546 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS13765 |
| Coordinate (Strand) | 2978096..2978641 (-) |
| NCBI ID | WP_003089493.1 |
| RefSeq | NC_017548 |
| Uniprot ID | A0A1C7B7Q9_PSEAI, A0A1F0I5Y5_9PSED, A0A0H2ZB54_PSEAB, Q9I1B4_PSEAE, A0A6N0KJ21_9PSED, A0A071KUX1_PSEAI, A0A448BL02_PSEFL, A6V5C1_PSEA7 |
| KEGG ID | pap:PSPA7_2896, pae:PA2365, pau:PA14_34070 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 8.6e-54 | 10..160 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 182 a.a.
>T6CP006459 NC_017548:c2978641-2978096 [Pseudomonas aeruginosa M18] [TssB]
MAESTQHKLDRVRPPRVQITYDVEIGNAIEKKELPLVVGILADLSGKPDTPPAKLVERRFVDIDRDNFNEILSSISPRAT
LQVDNTISGDDSKLNVELRFNHIEDFDPVNLVKQVVPLRRLFEARQRLRDLLTKLDGNDDLDQLLQDVVANTEGLQEIKA
ARPEAEAAPAGDSEPPADQPA*
MAESTQHKLDRVRPPRVQITYDVEIGNAIEKKELPLVVGILADLSGKPDTPPAKLVERRFVDIDRDNFNEILSSISPRAT
LQVDNTISGDDSKLNVELRFNHIEDFDPVNLVKQVVPLRRLFEARQRLRDLLTKLDGNDDLDQLLQDVVANTEGLQEIKA
ARPEAEAAPAGDSEPPADQPA*
Nucleotide sequence: 546 bp
>T6CP006459 NC_017548:c2978641-2978096 [Pseudomonas aeruginosa M18] [TssB]
ATGGCCGAGAGTACGCAGCACAAGCTGGACCGGGTGCGCCCGCCGCGCGTGCAGATCACCTACGACGTCGAGATCGGCAA
CGCCATCGAGAAGAAGGAGCTGCCCCTGGTGGTCGGCATCCTCGCCGACCTCTCCGGCAAGCCGGATACCCCGCCGGCGA
AGCTGGTCGAACGGCGTTTCGTCGACATCGACCGCGACAACTTCAACGAGATCCTCTCCTCCATCTCTCCCCGCGCCACC
CTGCAGGTCGACAACACCATCAGCGGCGACGACAGCAAGCTGAACGTCGAGCTGCGCTTCAACCACATCGAGGACTTCGA
CCCGGTCAACCTGGTGAAGCAGGTGGTCCCGTTGCGTCGCCTGTTCGAAGCGCGCCAGCGCCTGCGCGACCTGCTGACCA
AGCTCGACGGCAACGACGACCTCGACCAGTTGCTGCAGGACGTGGTGGCCAACACCGAAGGCCTGCAGGAAATCAAAGCG
GCCCGCCCGGAAGCCGAAGCGGCCCCGGCCGGCGACAGCGAACCCCCGGCCGACCAGCCGGCCTGA
ATGGCCGAGAGTACGCAGCACAAGCTGGACCGGGTGCGCCCGCCGCGCGTGCAGATCACCTACGACGTCGAGATCGGCAA
CGCCATCGAGAAGAAGGAGCTGCCCCTGGTGGTCGGCATCCTCGCCGACCTCTCCGGCAAGCCGGATACCCCGCCGGCGA
AGCTGGTCGAACGGCGTTTCGTCGACATCGACCGCGACAACTTCAACGAGATCCTCTCCTCCATCTCTCCCCGCGCCACC
CTGCAGGTCGACAACACCATCAGCGGCGACGACAGCAAGCTGAACGTCGAGCTGCGCTTCAACCACATCGAGGACTTCGA
CCCGGTCAACCTGGTGAAGCAGGTGGTCCCGTTGCGTCGCCTGTTCGAAGCGCGCCAGCGCCTGCGCGACCTGCTGACCA
AGCTCGACGGCAACGACGACCTCGACCAGTTGCTGCAGGACGTGGTGGCCAACACCGAAGGCCTGCAGGAAATCAAAGCG
GCCCGCCCGGAAGCCGAAGCGGCCCCGGCCGGCGACAGCGAACCCCCGGCCGACCAGCCGGCCTGA