Detailed information of component protein
Summary
| Component ID | T6CP006457 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00612  (Type i4a) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (166 a.a.); Nucleotide sequence (498 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS13755 |
| Coordinate (Strand) | 2976018..2976515 (-) |
| NCBI ID | WP_003089495.1 |
| RefSeq | NC_017548 |
| Uniprot ID | V6AEM9_PSEAI, A0A1C7BL22_PSEAI, A0A1F0I5Y8_9PSED, A0A0H2ZBE0_PSEAB, Q9I1B2_PSEAE, A0A6N0KLI4_9PSED, A0A069PXC4_PSEAI, A0A3S4PDJ8_PSEFL, A6V5B9_PSEA7 |
| KEGG ID | pau:PA14_34030, pae:PA2367, pap:PSPA7_2894 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 8.8e-29 | 11..138 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 166 a.a.
>T6CP006457 NC_017548:c2976515-2976018 [Pseudomonas aeruginosa M18] [TssD]
MDAIILDFGSDIKGDSLLVGYENKIEIMSYSHNVAMQVTNDVSNSERTSGKPHVGEFTLTKFIDTSTPTLNEYCCAGKPI
AEATITIGRNAAEGNGQIMPFIVYTLNNVVLSNVSVSGGAGGKPVETLSLNFTKIKWELTAQKDDGTKEGTAASTWDLAA
NQLVK*
MDAIILDFGSDIKGDSLLVGYENKIEIMSYSHNVAMQVTNDVSNSERTSGKPHVGEFTLTKFIDTSTPTLNEYCCAGKPI
AEATITIGRNAAEGNGQIMPFIVYTLNNVVLSNVSVSGGAGGKPVETLSLNFTKIKWELTAQKDDGTKEGTAASTWDLAA
NQLVK*
Nucleotide sequence: 498 bp
>T6CP006457 NC_017548:c2976515-2976018 [Pseudomonas aeruginosa M18] [TssD]
ATGGATGCGATCATTCTCGATTTCGGCAGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAGATCGAAAT
CATGTCCTACAGCCACAACGTGGCGATGCAGGTCACCAACGACGTCAGCAACTCGGAGCGCACCTCCGGCAAACCCCACG
TCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTCAACGAGTATTGCTGCGCCGGCAAGCCGATC
GCCGAGGCGACCATCACCATCGGGCGCAACGCCGCCGAGGGCAACGGGCAGATCATGCCCTTCATCGTCTACACCCTGAA
CAACGTGGTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCCGGCGGCAAGCCGGTAGAGACCCTGTCGCTGAACTTCACCA
AGATCAAGTGGGAGCTGACCGCGCAGAAGGACGACGGCACCAAGGAAGGCACGGCCGCCTCGACCTGGGACCTGGCCGCC
AACCAGCTGGTCAAGTGA
ATGGATGCGATCATTCTCGATTTCGGCAGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAGATCGAAAT
CATGTCCTACAGCCACAACGTGGCGATGCAGGTCACCAACGACGTCAGCAACTCGGAGCGCACCTCCGGCAAACCCCACG
TCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTCAACGAGTATTGCTGCGCCGGCAAGCCGATC
GCCGAGGCGACCATCACCATCGGGCGCAACGCCGCCGAGGGCAACGGGCAGATCATGCCCTTCATCGTCTACACCCTGAA
CAACGTGGTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCCGGCGGCAAGCCGGTAGAGACCCTGTCGCTGAACTTCACCA
AGATCAAGTGGGAGCTGACCGCGCAGAAGGACGACGGCACCAAGGAAGGCACGGCCGCCTCGACCTGGGACCTGGCCGCC
AACCAGCTGGTCAAGTGA