Detailed information of component protein


Summary

Component ID T6CP006456
Component protein type TssF
T6SS ID (Type) T6SS00612 insolico (Type i4a)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (598 a.a.); Nucleotide sequence (1794 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS13745
Coordinate (Strand) 2973803..2975596 (-)
NCBI ID WP_014602900.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.4e-184 6..593
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 598 a.a.    

>T6CP006456 NC_017548:c2975596-2973803 [Pseudomonas aeruginosa M18] [TssF]
MSDSIDADLLDYYQRELTWLRHAGGAFAERYPKVARRLQLAPGECPDPHVERLLEGFSLLTARLQRRLDDDYAEFSDALL
EQLYPLALRPLPSCAIVQFEPDPTQGNLAEGYRLPRDTALFVTTRGGDSVHFRSSAEATLWPLAIDEATLLGGEEAQALT
GVGAARSALRLSLRCLGEYRWDELSIERLRIHLAASPMGCAILYDLLAAHAVQVMAGAPGTPPAALRGLPEIVGFAADEA
LLPEEDGGHPGLRLLAEYFAFPDKFHFFDLPLSGALADGQTLYLYLVFDRAPTARLHLQAEDFQLGCAPAINLFPRTSEP
LRPDGTRSEYRLVADSHRENSVEIHSIRAVRSVAGSTVQPVPAYYGCRHDSHLGTLYWHARRIAGLTPNRLGSDLLLSLV
DTGFDPLRETPAFSLTAELLCTNRYLAERLGAGTALGFERPGPVAAARLRNAPSAQSQPRLDGQSRWRLVSQLTLNHLSL
VEGPRALEALREILALHNLRDDASARRQIEGLRQLDCQRVVAHVGEDAWRGWRNGLEIRLRLDPQHFVGASGVLFSAVLA
QFFSLYATANRFVRTVLVEADKEVKTWQPQAGSPLSL*

  Nucleotide sequence: 1794 bp    

>T6CP006456 NC_017548:c2975596-2973803 [Pseudomonas aeruginosa M18] [TssF]
ATGAGCGATTCGATTGATGCCGACCTGCTCGACTACTACCAGCGCGAGCTGACCTGGCTACGGCACGCCGGCGGCGCCTT
CGCCGAGCGCTATCCGAAGGTCGCCCGGCGCCTGCAACTGGCTCCCGGCGAATGCCCCGACCCGCACGTCGAGCGCCTGC
TGGAAGGTTTCTCGCTGCTCACCGCGCGCCTGCAACGGCGCCTCGACGACGACTACGCAGAGTTCAGCGACGCCCTCCTC
GAACAGCTCTACCCCCTGGCGCTGCGCCCGCTGCCGTCCTGCGCGATCGTCCAGTTCGAACCGGACCCGACCCAGGGCAA
CCTCGCCGAGGGCTACCGGCTGCCGCGCGACACCGCGCTGTTCGTCACCACCCGTGGCGGCGACAGCGTGCATTTCCGCA
GCAGCGCCGAGGCGACCCTGTGGCCGCTGGCGATCGACGAAGCGACCCTGCTCGGCGGCGAGGAGGCGCAAGCCCTGACC
GGAGTCGGCGCCGCCCGCTCGGCGTTGCGCCTGAGCCTGCGCTGCCTGGGCGAGTACCGCTGGGACGAACTGTCGATCGA
GCGCCTGCGCATCCACCTGGCGGCTTCGCCGATGGGCTGCGCGATCCTCTACGACCTGCTCGCCGCGCATGCCGTGCAGG
TCATGGCGGGGGCGCCCGGCACGCCGCCGGCGGCGCTCCGCGGACTGCCGGAGATCGTCGGCTTCGCCGCCGACGAGGCG
CTGCTGCCGGAGGAAGACGGCGGACATCCGGGCCTGCGCCTGCTCGCCGAGTACTTCGCCTTCCCCGACAAGTTCCACTT
CTTCGACCTGCCACTGTCCGGCGCGCTCGCCGACGGACAGACGCTCTACCTGTACCTGGTCTTCGATCGCGCACCGACGG
CACGCCTGCATTTGCAGGCGGAAGACTTCCAGCTCGGCTGCGCGCCGGCGATCAACCTCTTTCCGCGGACCTCGGAGCCG
CTGCGCCCGGACGGCACCCGCAGCGAGTACCGCCTGGTCGCCGACAGTCACCGCGAGAACAGCGTGGAAATCCATAGCAT
CCGCGCCGTGCGCTCGGTTGCCGGGAGCACCGTGCAGCCAGTCCCGGCCTACTATGGCTGCCGCCACGACAGCCACCTCG
GCACGCTCTACTGGCACGCCCGGCGCATCGCCGGGCTGACCCCGAACCGGCTGGGCAGCGATCTGCTGCTGAGCCTGGTG
GATACCGGCTTCGACCCGTTGCGCGAGACCCCGGCCTTCAGCCTGACCGCCGAGCTGCTATGCACCAATCGCTATCTGGC
CGAGCGCCTGGGTGCCGGCACCGCGCTGGGCTTCGAACGGCCCGGGCCGGTCGCCGCCGCACGCCTGCGCAACGCGCCCA
GCGCGCAGAGCCAGCCGCGCCTGGACGGCCAATCGCGCTGGAGACTGGTCTCGCAGCTGACCCTCAACCACCTCTCGCTG
GTGGAAGGCCCGCGCGCCCTCGAAGCCCTGCGGGAAATCCTCGCCCTGCACAACCTGCGCGACGACGCCAGCGCCCGCCG
GCAGATAGAAGGGCTGAGGCAACTCGACTGCCAGCGGGTGGTGGCGCACGTCGGCGAGGATGCCTGGCGCGGCTGGCGCA
ATGGCCTGGAAATCCGCCTGCGACTCGATCCGCAACACTTCGTCGGCGCCAGCGGCGTGCTGTTCTCCGCCGTGCTGGCG
CAGTTCTTCTCGCTGTATGCCACCGCCAACCGCTTCGTGCGCACGGTCCTGGTGGAAGCCGACAAGGAGGTGAAGACATG
GCAACCCCAGGCCGGCTCGCCGCTCTCCCTCTGA