Detailed information of component protein


Summary

Component ID T6CP006455
Component protein type TssG
T6SS ID (Type) T6SS00612 insolico (Type i4a)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS13740
Coordinate (Strand) 2972823..2973839 (-)
NCBI ID WP_003124579.1
RefSeq NC_017548
Uniprot ID UPI00006D844C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 8.3e-75 20..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 339 a.a.    

>T6CP006455 NC_017548:c2973839-2972823 [Pseudomonas aeruginosa M18] [TssG]
MATPGRLAALPLSQRLRRTPQRFELLQALLLLERERPQALPLGTGNAPRAEALRLRGPLLPLFASSEVESLLDDPQQPVL
STPVFGLGGPDGPLPYAYQEWLQQRARQKDHAPAEFLDLFQHRLLSLLYRVLRKHRVALGFAVPAATPVQAQLRALSGLL
PKALHERLALPDSAVLARTALFAGGRRSLAGFAGLVRQHFGVEARLDAYQGAWKEIPTASRSRLQRGGRNLRLGRDAIAG
TRTWDEHAGIALSLGPLDAREAARFFPDGDAHGQLASLAALYFGPDLDCRLSLLVSGGAPLRLERGTPPRLSWNTGLRRI
EDGQRQRIDLDLRQPEVA*

  Nucleotide sequence: 1017 bp    

>T6CP006455 NC_017548:c2973839-2972823 [Pseudomonas aeruginosa M18] [TssG]
ATGGCAACCCCAGGCCGGCTCGCCGCTCTCCCTCTGAGTCAGCGGCTGCGCCGCACGCCGCAGCGCTTCGAACTGTTGCA
GGCGCTGCTGCTGCTCGAACGCGAGCGTCCCCAGGCGTTGCCGCTGGGCACCGGCAACGCGCCGCGGGCGGAGGCCCTGC
GCCTGCGCGGGCCGCTGTTGCCACTGTTCGCCTCGAGCGAGGTGGAAAGCCTGCTCGACGACCCGCAGCAACCGGTGCTG
TCCACCCCGGTGTTCGGTCTCGGCGGACCCGACGGCCCGTTGCCCTATGCCTACCAGGAATGGCTGCAACAACGCGCCCG
GCAGAAGGACCATGCCCCCGCCGAGTTCCTCGACCTGTTCCAGCACCGCCTGCTCAGCCTGCTCTACCGGGTGCTGCGCA
AGCATCGCGTGGCGCTCGGTTTCGCGGTGCCGGCGGCGACCCCGGTGCAGGCGCAGCTACGTGCCCTCAGCGGCCTGTTG
CCAAAAGCCCTGCATGAGCGCCTGGCGCTGCCGGACAGCGCGGTGCTGGCACGCACCGCGCTGTTCGCCGGCGGGCGTCG
CTCCCTGGCCGGCTTCGCCGGCCTGGTGCGCCAGCACTTCGGCGTGGAGGCACGGCTGGACGCCTACCAGGGCGCCTGGA
AGGAAATCCCCACGGCCAGCCGCAGCCGGCTGCAACGCGGCGGGCGCAACCTGCGCCTGGGTCGCGATGCCATAGCCGGC
ACGCGCACCTGGGACGAACACGCCGGCATCGCCCTCAGCCTCGGTCCGCTGGATGCCCGCGAGGCCGCCCGCTTCTTCCC
CGACGGCGACGCCCATGGCCAGTTGGCCAGCCTCGCCGCGCTGTACTTCGGCCCCGACCTGGATTGTCGCCTGAGCCTGC
TGGTGAGCGGCGGCGCGCCGCTGCGCCTGGAGCGCGGTACACCGCCCAGGCTGAGCTGGAACACCGGCCTACGGCGCATC
GAAGACGGCCAGCGGCAGCGCATCGATCTCGACCTGCGGCAGCCGGAGGTAGCCTGA