Detailed information of component protein
Summary
| Component ID | T6CP006452 |
| Component protein type | TssI |
| T6SS ID (Type) | T6SS00611  (Type i3) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (742 a.a.); Nucleotide sequence (2226 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS00485 |
| Coordinate (Strand) | 113748..115973 (+) |
| NCBI ID | WP_004346969.1 |
| RefSeq | NC_017548 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Phage_GPD | PF05954.13 | 4.2e-106 | 29..329 |
| Phage_base_V | PF04717.14 | 1.7e-14 | 386..453 |
| Gp5_C | PF06715.14 | 2.9e-05 | 529..552 |
| Gp5_C | PF06715.14 | 6.5e-05 | 633..656 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 742 a.a.
>T6CP006452 NC_017548:113748-115973 [Pseudomonas aeruginosa M18] [TssI]
MALAQQTRLVRVDSPLGAEVLQLQRMEGREELGRPFAYELELISENPDLPLDGLLGKPASLALELHDGSRRHFHGIVAAC
SQGSGNGQFASYQVTLRPWLWLLTRTSDCRIFQNQKVPDIIKQVFRDLGFSDFEDALSRSYREWEYCVQYRETSFDFVSR
LMEQEGIYYWFRHEQSRHILVLSDAYGAHQSPPNYASVPYYPPTLEQRERDHFYDWHMAREVQSGSLSLNDYDFQRPGAR
LEVRSNIARSHAAADYPLYDYPGEYVQSQDGEQYARTRIEALQARYERVRLRGRARGLGSGHLFKLSGYPREDQNREYLV
VGAEYRVVQELYETGGGGVGAQFESELDCIDAGQAYRPLPTTPLPIVRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRH
DQSNENSSCWMRVSQAWAGKNWGSIQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGTKSRSSKGG
TPANFNEIRMEDKKGAEQLFIHAERNQDIEVENDETHWVGHDRTKTIDHDETVHVKHDRTETVDNNETITIGVDRTEKVG
NNEKISIGANRTEDVGSNETISIGVDRTEKVGSNEKISIGANRTEDVGNDETISIGANRSESVGNNETISIGADRSESVG
ANETIDIGGNQSTSIGKNESRSVGQGRDTSVGKDDSLDVGKSFTLNAGDSITLVTGAASIRMKKDGSIVISGKNITIDGS
GAINVKADKNVVVKGRKILQN*
MALAQQTRLVRVDSPLGAEVLQLQRMEGREELGRPFAYELELISENPDLPLDGLLGKPASLALELHDGSRRHFHGIVAAC
SQGSGNGQFASYQVTLRPWLWLLTRTSDCRIFQNQKVPDIIKQVFRDLGFSDFEDALSRSYREWEYCVQYRETSFDFVSR
LMEQEGIYYWFRHEQSRHILVLSDAYGAHQSPPNYASVPYYPPTLEQRERDHFYDWHMAREVQSGSLSLNDYDFQRPGAR
LEVRSNIARSHAAADYPLYDYPGEYVQSQDGEQYARTRIEALQARYERVRLRGRARGLGSGHLFKLSGYPREDQNREYLV
VGAEYRVVQELYETGGGGVGAQFESELDCIDAGQAYRPLPTTPLPIVRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRH
DQSNENSSCWMRVSQAWAGKNWGSIQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGTKSRSSKGG
TPANFNEIRMEDKKGAEQLFIHAERNQDIEVENDETHWVGHDRTKTIDHDETVHVKHDRTETVDNNETITIGVDRTEKVG
NNEKISIGANRTEDVGSNETISIGVDRTEKVGSNEKISIGANRTEDVGNDETISIGANRSESVGNNETISIGADRSESVG
ANETIDIGGNQSTSIGKNESRSVGQGRDTSVGKDDSLDVGKSFTLNAGDSITLVTGAASIRMKKDGSIVISGKNITIDGS
GAINVKADKNVVVKGRKILQN*
Nucleotide sequence: 2226 bp
>T6CP006452 NC_017548:113748-115973 [Pseudomonas aeruginosa M18] [TssI]
ATGGCACTTGCGCAACAGACCCGCCTGGTCCGGGTCGACAGTCCGCTCGGCGCGGAGGTCCTGCAATTGCAGCGAATGGA
GGGTCGCGAAGAGCTCGGCCGGCCGTTCGCCTACGAGCTGGAACTGATCTCGGAAAACCCCGACCTGCCACTCGACGGGC
TGCTGGGCAAGCCGGCCAGCCTGGCGCTGGAACTGCACGACGGCAGCCGGCGGCATTTCCACGGCATCGTCGCCGCTTGC
AGCCAGGGATCCGGCAACGGCCAGTTCGCCAGCTACCAGGTCACCCTGCGCCCCTGGCTGTGGCTGCTGACGCGCACCTC
CGACTGCCGCATCTTCCAGAACCAGAAGGTCCCGGACATCATCAAGCAGGTGTTCCGCGACCTCGGCTTCTCCGACTTCG
AGGACGCCCTGAGCCGCTCCTACCGCGAGTGGGAATACTGCGTGCAGTACCGCGAGACCAGTTTCGACTTCGTCAGCCGG
CTGATGGAGCAGGAAGGCATCTACTACTGGTTCCGCCACGAGCAGAGCCGCCACATCCTGGTGCTCTCCGACGCCTACGG
CGCGCACCAGAGCCCGCCGAACTACGCCAGCGTGCCCTACTACCCGCCGACCCTGGAACAGCGCGAGCGCGACCATTTCT
ACGACTGGCACATGGCGCGCGAGGTGCAGTCCGGCTCACTGAGCCTCAACGACTACGACTTCCAGCGTCCCGGCGCGCGC
CTGGAGGTGCGTTCGAACATCGCCCGCTCGCACGCGGCGGCCGACTACCCGCTGTACGACTACCCCGGCGAATACGTGCA
GAGCCAGGACGGCGAGCAGTACGCGCGGACCCGCATCGAAGCCTTGCAGGCGCGCTACGAACGGGTGCGCCTGCGCGGCC
GCGCCCGCGGCCTGGGTTCGGGCCACCTGTTCAAGCTCAGCGGCTACCCGCGCGAGGACCAGAACCGCGAGTACCTGGTG
GTCGGCGCCGAGTACCGGGTGGTCCAGGAACTCTACGAGACCGGCGGCGGCGGGGTCGGCGCGCAGTTCGAGAGCGAGCT
GGACTGCATCGATGCCGGCCAGGCCTACCGCCCCTTGCCGACCACTCCGCTGCCGATCGTCCGTGGCCCGCAGACTGCGG
TGGTGGTCGGGCCCAAGGGCGAGGAGATCTGGACCGACCAGTACGGCCGGGTCAAGGTGCATTTCCACTGGGACCGCCAC
GACCAGTCCAACGAGAATAGCTCCTGCTGGATGCGCGTCTCCCAGGCCTGGGCGGGGAAGAACTGGGGCTCGATCCAGAT
CCCGCGGATCGGCCAGGAAGTGATCGTCAGCTTCCTTGAAGGCGACCCGGACCGGCCGATCATCACCGGGCGGGTCTACA
ACGCCGAGCAGACGGTGCCCTACGAGCTGCCGGCGAACGCTACCCAGAGCGGCACCAAGAGCCGTTCGAGCAAGGGCGGC
ACGCCGGCCAACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTGTTCATCCATGCCGAGAGGAACCA
GGACATCGAGGTCGAGAACGACGAGACCCACTGGGTCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACCGTGC
ACGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCATCGGTGTCGACCGCACCGAGAAGGTCGGC
AACAACGAGAAGATCAGTATCGGCGCGAACCGCACCGAGGACGTCGGCAGCAACGAGACCATCAGCATCGGCGTCGACCG
CACCGAGAAGGTCGGCAGCAACGAGAAGATCAGCATCGGTGCCAATCGCACCGAGGACGTCGGCAACGACGAGACCATCA
GCATCGGCGCGAACCGTAGCGAGTCGGTGGGCAACAACGAGACGATCAGCATCGGCGCCGACCGCAGCGAGTCGGTGGGC
GCCAACGAGACCATCGACATAGGCGGCAACCAGAGCACCAGCATCGGCAAGAACGAGTCGCGCAGCGTCGGCCAGGGCCG
CGATACCTCGGTGGGCAAGGACGATAGCCTGGACGTGGGCAAGAGCTTCACGCTCAACGCCGGCGACTCGATCACCCTGG
TCACCGGTGCCGCCAGCATCCGCATGAAGAAGGACGGCAGCATCGTCATCAGCGGCAAGAACATCACCATCGACGGATCC
GGGGCGATCAACGTCAAGGCCGACAAGAACGTGGTGGTGAAGGGACGCAAGATCCTCCAGAACTGA
ATGGCACTTGCGCAACAGACCCGCCTGGTCCGGGTCGACAGTCCGCTCGGCGCGGAGGTCCTGCAATTGCAGCGAATGGA
GGGTCGCGAAGAGCTCGGCCGGCCGTTCGCCTACGAGCTGGAACTGATCTCGGAAAACCCCGACCTGCCACTCGACGGGC
TGCTGGGCAAGCCGGCCAGCCTGGCGCTGGAACTGCACGACGGCAGCCGGCGGCATTTCCACGGCATCGTCGCCGCTTGC
AGCCAGGGATCCGGCAACGGCCAGTTCGCCAGCTACCAGGTCACCCTGCGCCCCTGGCTGTGGCTGCTGACGCGCACCTC
CGACTGCCGCATCTTCCAGAACCAGAAGGTCCCGGACATCATCAAGCAGGTGTTCCGCGACCTCGGCTTCTCCGACTTCG
AGGACGCCCTGAGCCGCTCCTACCGCGAGTGGGAATACTGCGTGCAGTACCGCGAGACCAGTTTCGACTTCGTCAGCCGG
CTGATGGAGCAGGAAGGCATCTACTACTGGTTCCGCCACGAGCAGAGCCGCCACATCCTGGTGCTCTCCGACGCCTACGG
CGCGCACCAGAGCCCGCCGAACTACGCCAGCGTGCCCTACTACCCGCCGACCCTGGAACAGCGCGAGCGCGACCATTTCT
ACGACTGGCACATGGCGCGCGAGGTGCAGTCCGGCTCACTGAGCCTCAACGACTACGACTTCCAGCGTCCCGGCGCGCGC
CTGGAGGTGCGTTCGAACATCGCCCGCTCGCACGCGGCGGCCGACTACCCGCTGTACGACTACCCCGGCGAATACGTGCA
GAGCCAGGACGGCGAGCAGTACGCGCGGACCCGCATCGAAGCCTTGCAGGCGCGCTACGAACGGGTGCGCCTGCGCGGCC
GCGCCCGCGGCCTGGGTTCGGGCCACCTGTTCAAGCTCAGCGGCTACCCGCGCGAGGACCAGAACCGCGAGTACCTGGTG
GTCGGCGCCGAGTACCGGGTGGTCCAGGAACTCTACGAGACCGGCGGCGGCGGGGTCGGCGCGCAGTTCGAGAGCGAGCT
GGACTGCATCGATGCCGGCCAGGCCTACCGCCCCTTGCCGACCACTCCGCTGCCGATCGTCCGTGGCCCGCAGACTGCGG
TGGTGGTCGGGCCCAAGGGCGAGGAGATCTGGACCGACCAGTACGGCCGGGTCAAGGTGCATTTCCACTGGGACCGCCAC
GACCAGTCCAACGAGAATAGCTCCTGCTGGATGCGCGTCTCCCAGGCCTGGGCGGGGAAGAACTGGGGCTCGATCCAGAT
CCCGCGGATCGGCCAGGAAGTGATCGTCAGCTTCCTTGAAGGCGACCCGGACCGGCCGATCATCACCGGGCGGGTCTACA
ACGCCGAGCAGACGGTGCCCTACGAGCTGCCGGCGAACGCTACCCAGAGCGGCACCAAGAGCCGTTCGAGCAAGGGCGGC
ACGCCGGCCAACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTGTTCATCCATGCCGAGAGGAACCA
GGACATCGAGGTCGAGAACGACGAGACCCACTGGGTCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACCGTGC
ACGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCATCGGTGTCGACCGCACCGAGAAGGTCGGC
AACAACGAGAAGATCAGTATCGGCGCGAACCGCACCGAGGACGTCGGCAGCAACGAGACCATCAGCATCGGCGTCGACCG
CACCGAGAAGGTCGGCAGCAACGAGAAGATCAGCATCGGTGCCAATCGCACCGAGGACGTCGGCAACGACGAGACCATCA
GCATCGGCGCGAACCGTAGCGAGTCGGTGGGCAACAACGAGACGATCAGCATCGGCGCCGACCGCAGCGAGTCGGTGGGC
GCCAACGAGACCATCGACATAGGCGGCAACCAGAGCACCAGCATCGGCAAGAACGAGTCGCGCAGCGTCGGCCAGGGCCG
CGATACCTCGGTGGGCAAGGACGATAGCCTGGACGTGGGCAAGAGCTTCACGCTCAACGCCGGCGACTCGATCACCCTGG
TCACCGGTGCCGCCAGCATCCGCATGAAGAAGGACGGCAGCATCGTCATCAGCGGCAAGAACATCACCATCGACGGATCC
GGGGCGATCAACGTCAAGGCCGACAAGAACGTGGTGGTGAAGGGACGCAAGATCCTCCAGAACTGA