Detailed information of component protein


Summary

Component ID T6CP006450
Component protein type TssH
T6SS ID (Type) T6SS00611 insolico (Type i3)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (903 a.a.); Nucleotide sequence (2709 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS00460
Coordinate (Strand) 106670..109378 (+)
NCBI ID WP_014602339.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.2e-38 631..797
AAA_lid_9 PF17871.3 4.3e-28 373..468
ClpB_D2-small PF10431.11 2.1e-12 804..878
AAA PF00004.31 2.6e-09 234..367
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 903 a.a.    

>T6CP006450 NC_017548:106670-109378 [Pseudomonas aeruginosa M18] [TssH]
MSEISRVALFGKLNSLAYKAIEAATVFCKLRGNPYVELVHWFHQILQLPDSDLHQIVRQSGIDPARLAKDLTEALDRLPR
GSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVIGILKTPSLRHALTGLSAEFAKLKVEALTERFDEYVGASPEN
GLSASDGFNAGAAPGEASGALAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAG
VGKTAVVEGFALRIVAGDVPPALKDVELRALDVGLLQAGASMKGEFEQRLRQVIEDVQSSEKPIILFIDEAHTLVGAGGA
AGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEA
LEAAVRLSHRYIPARQLPDKSVSLLDTACARTAISLHAVPAEVDDSRRRIEALETELAIIRRESAIGVATAERQRNAETL
LAEERERLSALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEARLDEEQRQALHARLAELQAQLSALQGEEP
LILPTVDYQAVASVVADWTGIPVGRMARNEIETVLNLDQHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAG
TSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPD
VHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTEMIASLCADPELMPEPEAIAKSLREPLLKIFPPALLGRLVTIP
YYPLSDDMLKAISRLQLGRIKKRVEATHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREFLTRMLEGK
PLAGVRISSRDNQFHYDFAEAE*

  Nucleotide sequence: 2709 bp    

>T6CP006450 NC_017548:106670-109378 [Pseudomonas aeruginosa M18] [TssH]
ATGAGTGAGATCAGTCGCGTTGCGCTGTTCGGCAAGCTGAACAGCCTGGCCTACAAGGCCATCGAGGCCGCCACGGTATT
CTGCAAGCTGCGCGGCAATCCCTATGTCGAGCTGGTGCACTGGTTCCACCAGATCCTCCAGTTGCCGGACTCCGACCTGC
ACCAGATCGTCCGCCAGTCCGGGATCGACCCGGCGCGCCTGGCCAAGGACCTGACCGAGGCCCTCGACCGCCTGCCGCGC
GGCTCGACCTCGATCACCGACCTGTCCTCCCATGTCGAGGAAGCGGTGGAGCGCGGCTGGGTCTACGGCAGCCTGATGTT
CGGCGAGAGCCAGGTGCGCACCGGCTACCTGGTGATCGGCATCCTCAAGACGCCGAGCCTGCGCCATGCCCTCACCGGGC
TGTCGGCGGAATTCGCCAAGCTAAAGGTCGAGGCGCTCACCGAGCGCTTCGACGAGTACGTCGGCGCCTCGCCGGAGAAC
GGCCTGTCGGCCAGCGACGGCTTCAACGCCGGCGCCGCCCCGGGCGAGGCCAGCGGCGCCCTGGCGCCGAGCGCGATGGG
CAAGCAGGAGGCGCTCAAGCGCTTTACCGTGGACCTCACCGAGCAGGCCCGTAGCGGCAAGCTCGACCCCATCGTCGGGC
GTGACGAGGAGATCCGCCAGTTGGTGGACATCCTCATGCGCCGCCGGCAGAACAACCCGATCCTCACCGGCGAGGCCGGC
GTCGGCAAGACCGCGGTGGTGGAAGGCTTCGCCCTGCGCATCGTCGCCGGCGACGTCCCGCCGGCGCTGAAGGACGTCGA
ACTGCGCGCCCTCGACGTCGGCCTGCTGCAGGCCGGGGCGAGCATGAAGGGCGAGTTCGAGCAGCGCCTGCGCCAGGTGA
TCGAAGACGTGCAGAGTTCCGAGAAGCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGGTCGGCGCCGGTGGCGCG
GCCGGCACCGGCGACGCCGCCAACCTGCTCAAGCCGGCCCTGGCGCGCGGCACCCTGCGCACCGTGGCGGCGACCACCTG
GGCCGAGTACAAGAAGCACATCGAGAAGGACCCGGCGCTGACCCGGCGTTTCCAGGTGGTGCAGGTGGACGAGCCGTCCG
AGCACAAGGCCATCCTGATGATGCGCGGTGTCGCGTCGACCATGGAGAAGCACCACCAGGTGCAGATCCTCGACGAGGCG
CTGGAGGCGGCGGTCCGGCTGTCGCACCGCTACATCCCGGCGCGCCAGCTGCCGGACAAGTCGGTGAGCCTGCTGGATAC
CGCCTGCGCGCGCACCGCCATCAGCCTGCACGCGGTGCCGGCCGAGGTCGACGATAGCCGCCGGCGCATCGAGGCGCTGG
AAACCGAGCTGGCGATCATCCGCCGCGAGAGCGCCATCGGCGTCGCCACCGCCGAACGCCAGCGCAACGCCGAGACCCTG
CTGGCCGAGGAGCGCGAGCGCCTGTCCGCCCTGGAGCAGCGCTGGGCCGAGGAAAAACGCCTGGTCGACGAACTGCTGGA
GACCCGCGCCCGTCTGCGTGCCGCCGCCGAAGCGGTGGACGCCGGCGGCGTGCCGCTGGGCGAAGGCGAGGCGCGTCTCG
ACGAGGAACAGCGCCAGGCGCTGCATGCGCGGCTGGCGGAGCTGCAGGCGCAACTGAGCGCGTTGCAGGGCGAAGAGCCG
CTGATCCTGCCGACCGTGGACTACCAGGCGGTGGCCTCGGTGGTCGCCGACTGGACCGGCATCCCGGTCGGCCGCATGGC
GCGCAACGAGATCGAGACCGTGCTCAACCTCGACCAGCACCTGAAGAAGCGCATCATCGGCCAGGACCACGCGCTGGAGA
TGATCGCCAAGCGCATCCAGACTTCCCGCGCCGGCCTCGACAACCCGAGCAAGCCGATCGGCGTGTTCATGCTCGCCGGC
ACCTCCGGGGTGGGCAAGACCGAGACCGCGCTGGCCTTGGCCGAGGCCATGTACGGCGGCGAGCAGAATGTCATCACCAT
CAACATGAGCGAGTTCCAGGAAGCCCACACCGTCTCCACCCTCAAGGGCGCCCCGCCCGGCTACATCGGCTACGGCGAGG
GTGGCGTGCTGACCGAGGCGGTGCGTCGCAAGCCCTACAGCGTGGTGCTGCTGGATGAAGTGGAGAAGGCCCACCCGGAT
GTCCACGAGATCTTCTTCCAGGTCTTCGACAAGGGCGTGATGGAGGACGGCGAAGGCCGGGTGATCGACTTCAAGAACAC
CCTGATCCTGCTCACCACCAACGCCGGCACCGAGATGATCGCCAGCCTCTGCGCCGATCCGGAACTGATGCCCGAGCCGG
AAGCCATCGCCAAGTCGCTGCGCGAACCGCTGCTGAAGATCTTCCCGCCGGCGCTGCTCGGCCGCCTGGTGACCATCCCC
TACTACCCGCTCAGCGACGACATGCTCAAGGCCATTTCGCGCCTGCAACTGGGGCGGATCAAGAAGCGCGTGGAGGCGAC
CCACAAGGTGCCGTTCGAGTTCGACGAGGGCGTCGTCGACCTGATCGTCTCGCGCTGCACCGAGACCGAGAGCGGCGGCC
GGATGATCGACGCGATCCTCACCAACACGCTGTTGCCGGACATGAGCCGCGAGTTCCTCACCCGCATGCTCGAAGGCAAG
CCGTTGGCCGGGGTACGTATCAGTAGCCGCGACAACCAGTTCCACTACGACTTCGCCGAGGCCGAGTGA